RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB30004", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB30004 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6409741 6409741 PRJEB30004_P_NODE_206006_length_370_cov_3.157100_g190380_i0 PRJEB30004 206006 370 3.1571 11.68127 Vorticella sp. 1 2979179 SAR_Eukaryotes SAR_Eukaryotes 647 0   NTclustered gi|2304601489|gb|OP458310.1| 2979179 g190380 i0 99.717 88.9378378378378 353 1 95 0 18 370 1839 1487 Vorticella sp. 1 large subunit ribosomal RNA gene, partial sequence blastn 32907 647 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 1
9916708 9916708 PRJEB30004_P_NODE_258228_length_314_cov_2.709091_g242601_i0 PRJEB30004 258228 314 2.709091 8.50654574 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 235 2.72e-57   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g242601 i0 97.794 2.15923566878981 136 3 43 0 179 314 3082 2947 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 678 235 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
12792562 12792562 PRJEB30004_P_NODE_367071_length_242_cov_2.408867_g351444_i0 PRJEB30004 367071 242 2.408867 5.82945814 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 363 8.869999999999999e-96   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g351444 i0 93.776 17.004132231405 241 15 99 0 1 241 389 629 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 4115 363 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
18840345 18840345 PRJEB30004_P_NODE_562275_length_175_cov_1.632353_g546648_i0 PRJEB30004 562275 175 1.632353 2.85661775 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 313 6.13e-81   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g546648 i0 98.857 14.1885714285714 175 2 100 0 1 175 1500 1674 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 2483 313 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
20450456 20450456 PRJEB30004_P_NODE_588477_length_169_cov_1.776923_g572850_i0 PRJEB30004 588477 169 1.776923 3.00299987 Cyclidium glaucoma 35100 SAR_Eukaryotes SAR_Eukaryotes 278 2.14e-70   NTclustered gi|90657152|gb|DQ442810.1| 35100 g572850 i0 96.45 40.9230769230769 169 4 99 2 1 168 417 584 Cyclidium glaucoma isolate ES34 28S ribosomal RNA gene, partial sequence blastn 6916 278 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Cyclidiidae Cyclidium Cyclidium glaucoma
22994882 22994882 PRJEB30004_P_NODE_448259_length_208_cov_1.633136_g432632_i0 PRJEB30004 448259 208 1.633136 3.39692288 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 279 7.68e-71   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g432632 i0 90.909 6.36538461538461 209 17 100 2 1 208 107 314 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1324 279 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;