RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB30004", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJEB30004 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1310416 1310416 PRJEB30004_P_NODE_305082_length_278_cov_2.171548_g289455_i0 PRJEB30004 305082 278 2.171548 6.03690344 Bradybaena similaris 145626 Mollusca Mollusca 420 6.09e-113   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g289455 i0 93.907 183.535971223022 279 15 100 2 1 278 1220 1497 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 51023 420 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
2263946 2263946 PRJEB30004_P_NODE_501662_length_191_cov_1.552632_g486035_i0 PRJEB30004 501662 191 1.552632 2.96552712 Magallana 147004 Mollusca Mollusca 353 4.02e-93   NTclustered gi|28375710|dbj|AB102757.1| 29159 g486035 i0 100 37.0471204188482 191 0 100 0 1 191 3554 3744 Crassostrea gigas genes for ITS2, 28S rRNA, partial sequence, country: Japan: Okinawa (Haneji inland sea) blastn 7076 353 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
22984986 22984986 PRJEB30004_P_NODE_238179_length_333_cov_5.204082_g222552_i0 PRJEB30004 238179 333 5.204082 17.32959306 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.031   NTclustered gi|2912999747|dbj|AP039606.1| 145626 g222552 i0 100 0.0840840840840841 28 0 8 0 251 278 2800684 2800657 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 25, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;