RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB30004" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 8 ✖

bioproject 1

  • PRJEB30004 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
47866 47866 PRJEB30004_P_NODE_55081_length_970_cov_15.324382_g42710_i0 PRJEB30004 55081 970 15.324382 148.6465054 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 1544 0   NTclustered gi|27461806|gb|AY130826.1| 56466 g42710 i0 96.674 1.56082474226804 932 26 96 4 1 929 930 1 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 1514 1544 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
1315163 1315163 PRJEB30004_P_NODE_405322_length_224_cov_4.675676_g389695_i0 PRJEB30004 405322 224 4.675676 10.47351424 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 387 4.8e-103   NTclustered gi|27461806|gb|AY130826.1| 56466 g389695 i0 97.778 1.00446428571429 225 4 100 1 1 224 955 1179 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 225 387 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
3539029 3539029 PRJEB30004_P_NODE_105343_length_604_cov_10.867257_g90282_i0 PRJEB30004 105343 604 10.867257 65.63823228 Peranema 3287 Euglenozoa other_Eukaryota 1083 0   NTclustered gi|1803019098|gb|MT007870.1| 56466 g90282 i0 99.007 7.19205298013245 604 6 100 0 1 604 1290 687 Peranema trichophorum strain PtR small subunit ribosomal RNA gene, partial sequence blastn 4344 1083 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
5143537 5143537 PRJEB30004_P_NODE_410505_length_222_cov_2.437158_g394878_i0 PRJEB30004 410505 222 2.437158 5.41049076 Petalomonas cantuscygni 56452 Euglenozoa other_Eukaryota 311 2.94e-80   NTclustered gi|2228698|gb|U84731.1|PCU84731 56452 g394878 i0 93.023 74.954954954955 215 11 97 2 8 222 1884 1674 Petalomonas cantuscygni small subunit ribosomal RNA gene, complete sequence blastn 16640 311 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas cantuscygni
19155759 19155759 PRJEB30004_P_NODE_177876_length_412_cov_12.678284_g162269_i0 PRJEB30004 177876 412 12.678284 52.23453008 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 726 0   NTclustered gi|1803019516|gb|MT007902.1| 56466 g162269 i0 98.54 28.5849514563107 411 6 99 0 2 412 4 414 Peranema trichophorum isolate PP8 small subunit ribosomal RNA gene, partial sequence blastn 11777 726 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
23004176 23004176 PRJEB30004_P_NODE_639459_length_159_cov_1.366667_g623832_i0 PRJEB30004 639459 159 1.366667 2.17300053 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 272 9.28e-69   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g623832 i0 97.484 3 159 4 100 0 1 159 4134 3976 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 477 272 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
23941006 23941006 PRJEB30004_P_NODE_499899_length_191_cov_2.690789_g484272_i0 PRJEB30004 499899 191 2.690789 5.13940699 Peranema 3287 Euglenozoa other_Eukaryota 326 8.77e-85   NTclustered gi|1173576277|gb|KY883384.1| 56466 g484272 i0 97.382 14.5026178010471 191 5 100 0 1 191 1596 1786 Peranema trichophorum isolate PT small subunit ribosomal RNA gene, partial sequence blastn 2770 326 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
25214776 25214776 PRJEB30004_P_NODE_533120_length_182_cov_2.041958_g517493_i0 PRJEB30004 533120 182 2.041958 3.71636356 Peranema 3287 Euglenozoa other_Eukaryota 329 6.39e-86   NTclustered gi|1803019098|gb|MT007870.1| 56466 g517493 i0 99.448 31.1263736263736 181 1 99 0 1 181 1779 1959 Peranema trichophorum strain PtR small subunit ribosomal RNA gene, partial sequence blastn 5665 329 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;