RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB30004" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJEB30004 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3539198 3539198 PRJEB30004_P_NODE_502303_length_191_cov_1.276316_g486676_i0 PRJEB30004 502303 191 1.276316 2.43776356 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 348 1.87e-91   NTclustered gi|300078496|gb|GU001158.1| 5778 g486676 i0 99.476 6.40837696335079 191 1 100 0 1 191 1146 956 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1224 348 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5156071 5156071 PRJEB30004_P_NODE_672245_length_153_cov_1.438596_g656618_i0 PRJEB30004 672245 153 1.438596 2.20105188 Arcyria cinerea 137621 Evosea other_Eukaryota 134 4.3500000000000006e-27   NTclustered gi|2753773268|gb|PP982846.1| 137621 g656618 i0 93.333 5.69281045751634 90 6 59 0 64 153 2491 2580 Arcyria cinerea voucher MEL2416382 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 871 134 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
11192061 11192061 PRJEB30004_P_NODE_615689_length_163_cov_4.193548_g600062_i0 PRJEB30004 615689 163 4.193548 6.83548324 Flamella 490353 Evosea other_Eukaryota 302 1.22e-77   NTclustered gi|163943979|gb|EU186023.1| 490516 g600062 i0 100 40.4969325153374 163 0 100 0 1 163 627 789 Flamella balnearia 18S ribosomal RNA gene, partial sequence blastn 6601 302 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella balnearia
16628361 16628361 PRJEB30004_P_NODE_625194_length_162_cov_1.000000_g609567_i0 PRJEB30004 625194 162 1 1.62 Phalansterium solitarium 136499 Evosea other_Eukaryota 58.4 2.9e-4   NTclustered gi|300078500|gb|GU001162.1| 136499 g609567 i0 100 0.376543209876543 31 0 19 0 55 85 4802 4772 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 61 58.4 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;