RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB29441" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJEB29441 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3852694 3852694 PRJEB29441_P_NODE_29924_length_191_cov_2.492958_g29483_i0 PRJEB29441 29924 191 2.492958 4.76154978 Acanthamoeba sp. 5756 Discosea other_Eukaryota 331 1.88e-86   NTclustered gi|1562487679|gb|MH124198.1| 5756 g29483 i0 98.404 93.130890052356 188 3 98 0 1 188 247 434 Acanthamoeba sp. isolate AFR4_T13 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 17788 331 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
4816210 4816210 PRJEB29441_P_NODE_40304_length_166_cov_0.871795_g39863_i0 PRJEB29441 40304 166 0.871795 1.4471797 Ripella 1217112 Discosea other_Eukaryota 246 5.94e-61   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g39863 i0 93.976 87.2469879518072 166 4 99 2 1 165 654 814 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 14483 246 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
8953428 8953428 PRJEB29441_P_NODE_23168_length_219_cov_2.594118_g22727_i0 PRJEB29441 23168 219 2.594118 5.68111842 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 298 2.25e-76   NTclustered gi|300078498|gb|GU001160.1| 5755 g22727 i0 91.15 1.03196347031963 226 11 100 8 1 219 5923 5700 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 226 298 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8953721 8953721 PRJEB29441_P_NODE_42668_length_164_cov_1.026087_g42227_i0 PRJEB29441 42668 164 1.026087 1.68278268 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 292 7.41e-75   NTclustered gi|300078498|gb|GU001160.1| 5755 g42227 i0 98.78 36.6280487804878 164 2 100 0 1 164 5680 5517 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6007 292 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21702963 21702963 PRJEB29441_P_NODE_11478_length_330_cov_1.814947_g11037_i0 PRJEB29441 11478 330 1.814947 5.9893251 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 174 6.35e-39   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g11037 i0 81.106 8.59393939393939 217 41 66 0 109 325 44421 44637 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 2836 174 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;