RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB29441" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB29441 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5129042 5129042 PRJEB29441_P_NODE_36565_length_172_cov_2.073171_g36124_i0 PRJEB29441 36565 172 2.073171 3.56585412 Chlorobiota bacterium 2268192 Bacteria Bacteria 159 8.26e-35   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g36124 i0 83.626 5.53488372093023 171 26 99 2 3 172 282000 282169 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 952 159 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
14054422 14054422 PRJEB29441_P_NODE_14272_length_290_cov_2.435685_g13831_i0 PRJEB29441 14272 290 2.435685 7.0634865 Prosthecochloris sp. GSB1 281093 Bacteria Bacteria 206 1.9499999999999998e-48   NTclustered gi|1227310175|gb|CP022571.1| 281093 g13831 i0 79.866 542.865517241379 298 47 100 11 1 290 131406 131114 Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1 chromosome, complete genome blastn 157431 206 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. GSB1
32751543 32751543 PRJEB29441_P_NODE_45300_length_162_cov_1.141593_g44859_i0 PRJEB29441 45300 162 1.141593 1.84938066 Chlorobiota bacterium 2268192 Bacteria Bacteria 63.5 5.54e-10   NR MDB5033262.1 2268192 g44859 i0 62.3 1.96296296296296 53 20 98.1 0 2 160 486 538 MDB5033262.1 fhuA [Chlorobiota bacterium] diamond 318 63.5 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;