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contig_metadata

25 rows where bioproject = "PRJEB29441", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 25 ✖

tax_kingdom 1

  • Pseudomonadati · 25 ✖

bioproject 1

  • PRJEB29441 · 25 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
988150 988150 PRJEB29441_P_NODE_11521_length_329_cov_2.435714_g11080_i0 PRJEB29441 11521 329 2.435714 8.01349906 Peredibacter 263370 Bacteria Bacteria 597 3.169999999999999e-166   NTclustered gi|2631252187|gb|CP139487.1| 28202 g11080 i0 99.392 258.890577507599 329 2 100 0 1 329 511506 511178 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 85175 597 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
1301150 1301150 PRJEB29441_P_NODE_7222_length_434_cov_2.696104_g6783_i0 PRJEB29441 7222 434 2.696104 11.70109136 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 211 6.53e-50   NTclustered gi|2313021230|gb|CP102930.1| 959 g6783 i0 76.535 120.60599078341 456 65 97 25 9 429 2386188 2386636 Bdellovibrio bacteriovorus strain kdesi chromosome, complete genome blastn 52343 211 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
2576819 2576819 PRJEB29441_P_NODE_9503_length_369_cov_3.706250_g9062_i0 PRJEB29441 9503 369 3.70625 13.6760625 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 446 1.38e-120   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g9062 i0 88.564 125.769647696477 376 32 99 9 1 366 3447012 3447386 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 46409 446 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
3852978 3852978 PRJEB29441_P_NODE_47804_length_159_cov_5.336364_g47363_i0 PRJEB29441 47804 159 5.336364 8.48481876 Bdellovibrio reynosensis 2835041 Bacteria Bacteria 191 2.67e-44   NTclustered gi|2216477995|gb|CP093442.1| 2835041 g47363 i0 91.429 138.849056603774 140 10 87 2 1 139 953152 953014 Bdellovibrio reynosensis strain LBG001 chromosome, complete genome blastn 22077 191 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio reynosensis
3853056 3853056 PRJEB29441_P_NODE_8784_length_385_cov_2.416667_g8343_i0 PRJEB29441 8784 385 2.416667 9.30416795 Peredibacter starrii 28202 Bacteria Bacteria 680 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g8343 i0 98.701 280.153246753247 385 2 100 3 1 385 512157 511776 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 107859 680 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
5128784 5128784 PRJEB29441_P_NODE_21905_length_226_cov_1.152542_g21464_i0 PRJEB29441 21905 226 1.152542 2.60474492 Fluviispira sanaruensis 2493639 Bacteria Bacteria 213 8.72e-51   NTclustered gi|1566193515|dbj|AP019368.1| 2493639 g21464 i0 85.778 123.650442477876 225 4 99 11 2 226 400450 400254 Silvanigrellales bacterium RF1110005 DNA, complete genome blastn 27945 213 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis
6091299 6091299 PRJEB29441_P_NODE_15805_length_273_cov_2.321429_g15364_i0 PRJEB29441 15805 273 2.321429 6.33750117 Bacteriovorax 146784 Bacteria Bacteria 383 7.82e-102   NTclustered gi|1700689994|gb|CP030035.1| 960 g15364 i0 92.029 26.5384615384615 276 16 100 6 1 273 1661975 1661703 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 7245 383 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
7365939 7365939 PRJEB29441_P_NODE_3986_length_609_cov_2.762500_g3581_i0 PRJEB29441 3986 609 2.7625 16.823625 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 529 2.2899999999999994e-145   NTclustered gi|507148233|ref|NR_103040.1| 453816 g3581 i0 83.646 102.875205254516 587 71 93 14 6 571 1154 1736 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 62651 529 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
11191477 11191477 PRJEB29441_P_NODE_12709_length_311_cov_2.316794_g12268_i0 PRJEB29441 12709 311 2.316794 7.20522934 Bdellovibrio 958 Bacteria Bacteria 318 2.6e-82   NTclustered gi|2800924434|gb|CP168967.1| 959 g12268 i0 85.437 185.900321543408 309 41 98 3 1 306 783602 783295 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 57815 318 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
15328955 15328955 PRJEB29441_P_NODE_5673_length_498_cov_1.866370_g5240_i0 PRJEB29441 5673 498 1.86637 9.2945226 uncultured Oligoflexales bacterium 2735263 Bacteria Bacteria 477 6.7699999999999984e-130   NTclustered gi|2531963191|emb|OY282434.1| 2735263 g5240 i0 84.679 425.817269076305 483 68 96 6 3 481 955709 956189 MAG: uncultured Oligoflexales bacterium genome assembly, chromosome: 1 blastn 212057 477 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     uncultured Oligoflexales bacterium
16603045 16603045 PRJEB29441_P_NODE_12534_length_314_cov_1.177358_g12093_i0 PRJEB29441 12534 314 1.177358 3.69690412 Peredibacter starrii 28202 Bacteria Bacteria 518 2.41e-142   NTclustered gi|2631252187|gb|CP139487.1| 28202 g12093 i0 96.497 11.812101910828 314 10 100 1 1 314 512166 512478 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 3709 518 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
17878137 17878137 PRJEB29441_P_NODE_26595_length_203_cov_4.012987_g26154_i0 PRJEB29441 26595 203 4.012987 8.14636361 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 303 4.42e-78   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g26154 i0 93.596 82.7044334975369 203 13 100 0 1 203 3446935 3446733 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 16789 303 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
19151966 19151966 PRJEB29441_P_NODE_24396_length_213_cov_2.487805_g23955_i0 PRJEB29441 24396 213 2.487805 5.29902465 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 224 3.7499999999999997e-54   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g23955 i0 85.648 642.549295774648 216 27 100 4 1 213 3448023 3448237 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 136863 224 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
21390354 21390354 PRJEB29441_P_NODE_18237_length_251_cov_2.529703_g17796_i0 PRJEB29441 18237 251 2.529703 6.34955453 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 363 9.249999999999997e-96   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g17796 i0 92.913 175.880478087649 254 11 99 7 2 251 701094 700844 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 44146 364 0.997252747252747 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
22978901 22978901 PRJEB29441_P_NODE_9759_length_363_cov_2.114650_g9318_i0 PRJEB29441 9759 363 2.11465 7.6761795 uncultured Oligoflexales bacterium 2735263 Bacteria Bacteria 294 5.18e-75   NTclustered gi|2531963191|emb|OY282434.1| 2735263 g9318 i0 83.133 182.528925619835 332 47 91 7 30 359 955403 955079 MAG: uncultured Oligoflexales bacterium genome assembly, chromosome: 1 blastn 66258 294 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     uncultured Oligoflexales bacterium
23940767 23940767 PRJEB29441_P_NODE_48139_length_157_cov_2.222222_g47698_i0 PRJEB29441 48139 157 2.222222 3.48888854 Bdellovibrio 958 Bacteria Bacteria 285 1.17e-72   NTclustered gi|2328635023|gb|CP106855.1| 1732569 g47698 i0 99.363 273.388535031847 157 1 100 0 1 157 2945375 2945219 Bdellovibrio sp. SKB1291214 chromosome, complete genome blastn 42922 285 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. SKB1291214
24252433 24252433 PRJEB29441_P_NODE_36260_length_173_cov_1.645161_g35819_i0 PRJEB29441 36260 173 1.645161 2.84612853 uncultured Oligoflexales bacterium 2735263 Bacteria Bacteria 207 2.93e-49   NTclustered gi|2531963191|emb|OY282434.1| 2735263 g35819 i0 89.157 698.861271676301 166 18 96 0 8 173 955709 955874 MAG: uncultured Oligoflexales bacterium genome assembly, chromosome: 1 blastn 120903 207 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     uncultured Oligoflexales bacterium
25214419 25214419 PRJEB29441_P_NODE_3840_length_622_cov_4.457243_g3441_i0 PRJEB29441 3840 622 4.457243 27.72405146 Bdellovibrio 958 Bacteria Bacteria 804 0   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g3441 i0 90.096 193.720257234727 626 53 100 9 1 622 666324 666944 Bdellovibrio sp. qaytius chromosome, complete genome blastn 120494 809 0.993819530284302 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
28770137 28770137 PRJEB29441_P_NODE_40707_length_166_cov_0.871795_g40266_i0 PRJEB29441 40707 166 0.871795 1.4471797 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 90.1 2.58e-19   NR HEY8279311.1 3034175 g40266 i0 80 1.98795180722892 55 11 99.4 0 2 166 217 271 HEY8279311.1 FAD-dependent oxidoreductase [Bdellovibrionota bacterium] diamond 330 90.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30507240 30507240 PRJEB29441_P_NODE_44133_length_163_cov_0.894737_g43692_i0 PRJEB29441 44133 163 0.894737 1.45842131 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 43.5 0.00488   NR MBC74374.1 2026745 g43692 i0 58.8 0.625766871165644 34 14 62.6 0 14 115 11 44 MBC74374.1 hypothetical protein [Halobacteriovoraceae bacterium] diamond 102 43.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
31170471 31170471 PRJEB29441_P_NODE_44175_length_163_cov_0.894737_g43734_i0 PRJEB29441 44175 163 0.894737 1.45842131 Bdellovibrio sp. 28-41-41 1970323 Bacteria Bacteria 103 6.87e-25   NR OYZ23720.1 1970323 g43734 i0 96 0.920245398773006 50 2 92 0 152 3 252 301 OYZ23720.1 MAG: hypothetical protein B7Y39_03800 [Bdellovibrio sp. 28-41-41] diamond 150 103 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41
31581988 31581988 PRJEB29441_P_NODE_39076_length_167_cov_0.864407_g38635_i0 PRJEB29441 39076 167 0.864407 1.44355969 Silvanigrellales bacterium 2767476 Bacteria Bacteria 93.2 4.350000000000001e-21   NR MCA2961930.1 2767476 g38635 i0 83.6 0.988023952095808 55 9 98.8 0 3 167 28 82 MCA2961930.1 RNase adapter RapZ [Silvanigrellales bacterium] diamond 165 93.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales     Silvanigrellales bacterium
31929737 31929737 PRJEB29441_P_NODE_38277_length_168_cov_1.344538_g37836_i0 PRJEB29441 38277 168 1.344538 2.25882384 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 90.1 1.67e-20   NR MBL7557679.1 2026715 g37836 i0 89.3 1 56 6 100 0 168 1 43 98 MBL7557679.1 tetratricopeptide repeat protein [Pseudobdellovibrionaceae bacterium] diamond 168 90.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31993066 31993066 PRJEB29441_P_NODE_44238_length_163_cov_0.894737_g43797_i0 PRJEB29441 44238 163 0.894737 1.45842131 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 46.6 5.04e-4   NR WP_413290538.1 3394358 g43797 i0 36.4 1.01226993865031 55 32 95.7 1 8 163 18 72 WP_413290538.1 biotin--[acetyl-CoA-carboxylase] ligase [Bdellovibrio sp. HCB337] diamond 165 46.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
32720103 32720103 PRJEB29441_P_NODE_34020_length_179_cov_1.569231_g33579_i0 PRJEB29441 34020 179 1.569231 2.80892349 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 52 8.52e-6   NR MCC6137470.1 2026715 g33579 i0 50 0.804469273743017 48 24 80.4 0 36 179 240 287 MCC6137470.1 PAS domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 144 52 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;