RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB29441", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB29441 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2576232 2576232 PRJEB29441_P_NODE_19043_length_245_cov_2.147959_g18602_i0 PRJEB29441 19043 245 2.147959 5.26249955 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 453 5.1900000000000006e-123   NTclustered gi|3646462|emb|AJ228801.1| 52061 g18602 i0 100 43.3714285714286 245 0 100 0 1 245 576 820 Stenostomum leucops partial 28S rRNA gene blastn 10626 453 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
29142852 29142852 PRJEB29441_P_NODE_29229_length_194_cov_1.048276_g28788_i0 PRJEB29441 29229 194 1.048276 2.03365544 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 2.39e-25   NR THD28882.1 6192 g28788 i0 81.3 6.92783505154639 64 12 99 0 193 2 374 437 THD28882.1 Methylmalonyl Coenzyme A mutase [Fasciola hepatica] diamond 1344 107 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola hepatica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;