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contig_metadata

5 rows where bioproject = "PRJEB29441" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 5 ✖

bioproject 1

  • PRJEB29441 · 5 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15328937 15328937 PRJEB29441_P_NODE_48493_length_154_cov_2.009524_g48052_i0 PRJEB29441 48493 154 2.009524 3.09466696 uncultured delta proteobacterium DeepAnt-1F12 357894 Bacteria Bacteria 204 3.3e-48   NTclustered gi|82617822|gb|DQ267495.1| 357894 g48052 i0 90.85 162.636363636364 153 12 99 2 1 152 4642 4793 Uncultured delta proteobacterium DeepAnt-1F12 fosmid, complete sequence blastn 25046 204 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium DeepAnt-1F12
20114764 20114764 PRJEB29441_P_NODE_31336_length_187_cov_1.442029_g30895_i0 PRJEB29441 31336 187 1.442029 2.69659423 root 1 Root_unresolved Root_unresolved 331 1.84e-86   NTclustered gi|1701701360|gb|MN171619.1| 34034 g30895 i0 98.919 98.9251336898396 185 2 99 0 3 187 14 198 Uncultured delta proteobacterium clone 10P.39296 16S ribosomal RNA gene, partial sequence blastn 18499 331 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22978586 22978586 PRJEB29441_P_NODE_33999_length_179_cov_1.953846_g33558_i0 PRJEB29441 33999 179 1.953846 3.49738434 uncultured delta proteobacterium 34034 Bacteria Bacteria 265 1.79e-66   NTclustered gi|529280299|gb|KF379626.1| 34034 g33558 i0 93.296 98.9776536312849 179 12 100 0 1 179 190 12 Uncultured delta proteobacterium clone CAS9031 16S ribosomal RNA gene, partial sequence blastn 17717 265 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24252065 24252065 PRJEB29441_P_NODE_14300_length_290_cov_1.456432_g13859_i0 PRJEB29441 14300 290 1.456432 4.2236528 uncultured delta proteobacterium 34034 Bacteria Bacteria 209 1.51e-49   NTclustered gi|374854163|dbj|AP011765.1| 34034 g13859 i0 82.143 40.9620689655172 252 38 85 6 1 247 13473 13722 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 11879 209 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
25214420 25214420 PRJEB29441_P_NODE_38560_length_167_cov_1.728814_g38119_i0 PRJEB29441 38560 167 1.728814 2.88711938 Bacteria 2 Bacteria Bacteria 255 9.950000000000001e-64   NTclustered gi|699981224|gb|KM207378.1| 34034 g38119 i0 94.012 101.491017964072 167 10 100 0 1 167 255 89 Uncultured delta proteobacterium clone MA-04 16S ribosomal RNA gene, partial sequence blastn 16949 255 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;