RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB29441", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJEB29441 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26772 26772 PRJEB29441_P_NODE_46781_length_161_cov_0.910714_g46340_i0 PRJEB29441 46781 161 0.910714 1.46624954 Spizellomycetales 34478 Fungi Fungi 93.2 1.38e-20   NR TPX65963.1 117820 g46340 i0 84.9 7.88198757763975 53 8 98.8 0 160 2 66 118 TPX65963.1 hypothetical protein SpCBS45565_g04822 [Spizellomyces sp. 'palustris'] diamond 1269 93.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces sp. 'palustris'
24252184 24252184 PRJEB29441_P_NODE_21260_length_229_cov_2.622222_g20819_i0 PRJEB29441 21260 229 2.622222 6.00488838 Chytriomycetaceae sp. 2012318 Fungi Fungi 52.8 0.02   NTclustered gi|2468791082|gb|OQ702938.1| 2012318 g20819 i0 100 0.122270742358079 28 0 12 0 122 149 4589 4562 Chytriomycetaceae sp. isolate PSC286 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae   Chytriomycetaceae sp.
28107033 28107033 PRJEB29441_P_NODE_42505_length_164_cov_1.634783_g42064_i0 PRJEB29441 42505 164 1.634783 2.68104412 Thoreauomyces humboldtii 1396496 Fungi Fungi 77 7.76e-15   NR KAJ3006613.1 1396496 g42064 i0 67.9 2.92682926829268 53 17 97 0 5 163 150 202 KAJ3006613.1 alcohol dehydrogenase [Thoreauomyces humboldtii] diamond 480 77 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Thoreauomyces Thoreauomyces humboldtii
29086112 29086112 PRJEB29441_P_NODE_48188_length_156_cov_3.149533_g47747_i0 PRJEB29441 48188 156 3.149533 4.91327148 Cladochytrium replicatum 109936 Fungi Fungi 62.8 9.48e-10   NR KAI8801457.1 109936 g47747 i0 57.4 2.84615384615385 47 20 90.4 0 155 15 264 310 KAI8801457.1 putative ABC transporter [Cladochytrium replicatum] diamond 444 62.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium replicatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;