RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB29441" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJEB29441 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15328808 15328808 PRJEB29441_P_NODE_38253_length_168_cov_1.495798_g37812_i0 PRJEB29441 38253 168 1.495798 2.51294064 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 311 2.11e-80   NTclustered gi|985614202|gb|CP010834.1| 1609968 g37812 i0 100 167 168 0 100 0 1 168 496557 496724 Methanobrevibacter sp. YE315, complete genome blastn 28056 311 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
16290875 16290875 PRJEB29441_P_NODE_17793_length_255_cov_1.485437_g17352_i0 PRJEB29441 17793 255 1.485437 3.78786435 root 1 Root_unresolved Root_unresolved 466 6.98e-127   NTclustered gi|5725307|emb|AJ009958.1| 66852 g17352 i0 99.608 101 255 1 100 0 1 255 476 730 Methanobrevibacter sp. SM9 16S rRNA gene, partial blastn 25755 466 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
16291066 16291066 PRJEB29441_P_NODE_44993_length_162_cov_2.097345_g44552_i0 PRJEB29441 44993 162 2.097345 3.3976989 Methanobrevibacter 2172 Archaea Archaea 278 2.04e-70   NTclustered gi|968564921|gb|CP011266.1| 230361 g44552 i0 97.531 79.7160493827161 162 4 100 0 1 162 542686 542525 Methanobrevibacter millerae strain SM9, complete genome blastn 12914 278 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;