RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB29441", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJEB29441 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13741814 13741814 PRJEB29441_P_NODE_40251_length_166_cov_0.871795_g39810_i0 PRJEB29441 40251 166 0.871795 1.4471797 Trepomonas 44997 Fornicata other_Eukaryota 307 2.69e-79   NTclustered gi|2592099216|gb|OR670399.1| 460177 g39810 i0 100 72.1927710843374 166 0 100 0 1 166 591 756 Trepomonas sp. PPS6 isolate NO666 small subunit ribosomal RNA gene, partial sequence blastn 11984 307 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas sp. PPS6
16603643 16603643 PRJEB29441_P_NODE_48194_length_156_cov_2.859813_g47753_i0 PRJEB29441 48194 156 2.859813 4.46130828 Trichomonas gallinae 56777 Parabasalia other_Eukaryota 119 1.2500000000000001e-22   NTclustered gi|2587729139|gb|OR478975.1| 56777 g47753 i0 91.765 6.94871794871795 85 7 54 0 71 155 908 824 Trichomonas gallinae elongation factor 1 alpha (EF1A) mRNA, complete cds blastn 1084 119 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas gallinae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;