RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB29441", tax_clade = "Luna-1 subcluster" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Luna-1 subcluster · 3 ✖

bioproject 1

  • PRJEB29441 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11504806 11504806 PRJEB29441_P_NODE_39390_length_167_cov_0.864407_g38949_i0 PRJEB29441 39390 167 0.864407 1.44355969 Rhodoluna lacicola 529884 Bacteria Bacteria 171 3.7099999999999997e-38   NTclustered gi|2318878936|dbj|AP026911.1| 529884 g38949 i0 86.076 0.946107784431138 158 22 95 0 1 158 93253 93410 Rhodoluna lacicola KACHI23 DNA, complete genome blastn 158 171 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola
16603118 16603118 PRJEB29441_P_NODE_15874_length_272_cov_19.636771_g15433_i0 PRJEB29441 15874 272 19.636771 53.41201712 Rhodoluna lacicola 529884 Bacteria Bacteria 481 2.69e-131   NTclustered gi|649018083|gb|CP007490.1| 529884 g15433 i0 98.529 167.9375 272 4 100 0 1 272 519303 519574 Rhodoluna lacicola strain MWH-Ta8 chromosome, complete genome blastn 45679 481 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola
23940614 23940614 PRJEB29441_P_NODE_2879_length_723_cov_136.364985_g2529_i0 PRJEB29441 2879 723 136.364985 985.91884155 Rhodoluna 529883 Bacteria Bacteria 1179 0   NTclustered gi|1666461687|gb|CP040509.1| 232537 g2529 i0 96.143 158.818810511757 726 20 99 6 2 723 478372 477651 Rhodoluna limnophila strain 27D-LEPI chromosome, complete genome blastn 114826 1179 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;