RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB29441", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJEB29441 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19152450 19152450 PRJEB29441_P_NODE_9996_length_358_cov_5.284790_g9555_i0 PRJEB29441 9996 358 5.28479 18.9195482 Acanthocystis nichollsi 299881 Root_unresolved Root_unresolved 91.6 7.18e-14   NTclustered gi|1093394895|gb|KX640050.1| 299881 g9555 i0 90.141 14.6927374301676 71 6 20 1 288 358 708 777 Acanthocystis nichollsi clone 283.10 18S ribosomal RNA gene, partial sequence blastn 5260 91.6 1 Eukaryota Haptista     Centroplasthelida Acanthocystida Acanthocystidae Acanthocystis Acanthocystis nichollsi
30728315 30728315 PRJEB29441_P_NODE_45754_length_162_cov_0.902655_g45313_i0 PRJEB29441 45754 162 0.902655 1.4623011 Pavlovales sp. CCMP2436 483367 Haptophyta other_Eukaryota 55.8 2.87e-7   NR KAJ1629417.1 483367 g45313 i0 51.1 1.83333333333333 47 23 87 0 5 145 250 296 KAJ1629417.1 hypothetical protein T492DRAFT_840839 [Pavlovales sp. CCMP2436] diamond 297 55.8 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436
31866356 31866356 PRJEB29441_P_NODE_40797_length_166_cov_0.871795_g40356_i0 PRJEB29441 40797 166 0.871795 1.4471797 Prymnesium parvum 97485 Haptophyta other_Eukaryota 64.7 2.28e-10   NR KAL1499142.1 97485 g40356 i0 68.4 0.686746987951807 38 12 68.7 0 137 24 3100 3137 KAL1499142.1 hypothetical protein AB1Y20_013653 [Prymnesium parvum] diamond 114 64.7 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;