RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB29441", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJEB29441 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2576650 2576650 PRJEB29441_P_NODE_43763_length_163_cov_1.754386_g43322_i0 PRJEB29441 43763 163 1.754386 2.85964918 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 285 1.23e-72   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g43322 i0 98.16 34.7300613496933 163 3 100 0 1 163 1308412 1308574 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 5661 285 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
16603593 16603593 PRJEB29441_P_NODE_44634_length_163_cov_0.894737_g44193_i0 PRJEB29441 44634 163 0.894737 1.45842131 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 115 1.7100000000000003e-21   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g44193 i0 84.034 2.85889570552147 119 19 73 0 31 149 2962814 2962932 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 466 115 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
25214416 25214416 PRJEB29441_P_NODE_38100_length_168_cov_2.268908_g37659_i0 PRJEB29441 38100 168 2.268908 3.81176544 Rubrivirga 1434037 Bacteria Bacteria 250 4.66e-62   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g37659 i0 93.452 420.511904761905 168 11 100 0 1 168 806636 806803 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 70646 250 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;