RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB29441" and tax_clade = "Candidatus Thermofonsia Clade 3"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Candidatus Thermofonsia Clade 3 · 3 ✖

bioproject 1

  • PRJEB29441 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1301024 1301024 PRJEB29441_P_NODE_43262_length_164_cov_0.886957_g42821_i0 PRJEB29441 43262 164 0.886957 1.45460948 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 167 4.689999999999999e-37   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g42821 i0 85.03 1.35975609756098 167 22 100 2 1 164 3494913 3495079 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 223 167 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
14054498 14054498 PRJEB29441_P_NODE_17932_length_254_cov_1.287805_g17491_i0 PRJEB29441 17932 254 1.287805 3.2710247 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 222 1.66e-53   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g17491 i0 85.648 36.5590551181102 216 25 83 6 1 212 3495932 3496145 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 9286 222 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
19152143 19152143 PRJEB29441_P_NODE_35336_length_176_cov_0.968504_g34895_i0 PRJEB29441 35336 176 0.968504 1.70456704 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 219 1.3799999999999999e-52   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g34895 i0 89.205 22.9488636363636 176 18 100 1 1 176 3495267 3495093 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 4039 219 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;