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contig_metadata

18 rows where bioproject = "PRJEB29441" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 18 ✖

bioproject 1

  • PRJEB29441 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3852694 3852694 PRJEB29441_P_NODE_29924_length_191_cov_2.492958_g29483_i0 PRJEB29441 29924 191 2.492958 4.76154978 Acanthamoeba sp. 5756 Discosea other_Eukaryota 331 1.88e-86   NTclustered gi|1562487679|gb|MH124198.1| 5756 g29483 i0 98.404 93.130890052356 188 3 98 0 1 188 247 434 Acanthamoeba sp. isolate AFR4_T13 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 17788 331 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
4816210 4816210 PRJEB29441_P_NODE_40304_length_166_cov_0.871795_g39863_i0 PRJEB29441 40304 166 0.871795 1.4471797 Ripella 1217112 Discosea other_Eukaryota 246 5.94e-61   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g39863 i0 93.976 87.2469879518072 166 4 99 2 1 165 654 814 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 14483 246 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
7678602 7678602 PRJEB29441_P_NODE_19807_length_240_cov_0.931937_g19366_i0 PRJEB29441 19807 240 0.931937 2.2366488 Physarum polycephalum 5791 Evosea other_Eukaryota 296 9.03e-76   NTclustered gi|3221|emb|V01159.1| 5791 g19366 i0 95.652 6.3 184 8 77 0 57 240 2481 2298 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 1512 296 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
8953428 8953428 PRJEB29441_P_NODE_23168_length_219_cov_2.594118_g22727_i0 PRJEB29441 23168 219 2.594118 5.68111842 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 298 2.25e-76   NTclustered gi|300078498|gb|GU001160.1| 5755 g22727 i0 91.15 1.03196347031963 226 11 100 8 1 219 5923 5700 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 226 298 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8953666 8953666 PRJEB29441_P_NODE_39008_length_167_cov_0.864407_g38567_i0 PRJEB29441 39008 167 0.864407 1.44355969 Schizoplasmodiopsis pseudoendospora 668367 Evosea other_Eukaryota 108 2.95e-19   NTclustered gi|260909289|gb|FJ766475.1| 668367 g38567 i0 84.071 0.676646706586826 113 16 66 2 57 167 216 328 Schizoplasmodiopsis pseudoendospora strain PBR-G5-1 culture-collection ATCC:PRA-195 clone 36 18S ribosomal RNA gene, partial sequence blastn 113 108 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis pseudoendospora
8953721 8953721 PRJEB29441_P_NODE_42668_length_164_cov_1.026087_g42227_i0 PRJEB29441 42668 164 1.026087 1.68278268 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 292 7.41e-75   NTclustered gi|300078498|gb|GU001160.1| 5755 g42227 i0 98.78 36.6280487804878 164 2 100 0 1 164 5680 5517 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6007 292 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16291022 16291022 PRJEB29441_P_NODE_38993_length_167_cov_0.864407_g38552_i0 PRJEB29441 38993 167 0.864407 1.44355969 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 254 3.58e-63   NTclustered gi|441475833|emb|FN562425.4| 688089 g38552 i0 97.333 10.8622754491018 150 3 89 1 19 167 240 389 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 1814 254 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
16603456 16603456 PRJEB29441_P_NODE_35174_length_176_cov_1.606299_g34733_i0 PRJEB29441 35174 176 1.606299 2.82708624 Schizoplasmodiopsis pseudoendospora 668367 Evosea other_Eukaryota 204 3.87e-48   NTclustered gi|260909289|gb|FJ766475.1| 668367 g34733 i0 87.5 2.75568181818182 176 22 100 0 1 176 1449 1624 Schizoplasmodiopsis pseudoendospora strain PBR-G5-1 culture-collection ATCC:PRA-195 clone 36 18S ribosomal RNA gene, partial sequence blastn 485 204 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis pseudoendospora
19152182 19152182 PRJEB29441_P_NODE_37816_length_169_cov_1.700000_g37375_i0 PRJEB29441 37816 169 1.7 2.873 Ceratiomyxella tahitiensis 661162 Evosea other_Eukaryota 307 2.73e-79   NTclustered gi|254679474|gb|FJ544419.1| 661162 g37375 i0 99.408 47.3668639053254 169 1 100 0 1 169 1525 1357 Ceratiomyxella tahitiensis isolate HI04-93-l-1 18S ribosomal RNA gene, partial sequence blastn 8005 307 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Schizoplasmodiidae Ceratiomyxella Ceratiomyxella tahitiensis
21702963 21702963 PRJEB29441_P_NODE_11478_length_330_cov_1.814947_g11037_i0 PRJEB29441 11478 330 1.814947 5.9893251 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 174 6.35e-39   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g11037 i0 81.106 8.59393939393939 217 41 66 0 109 325 44421 44637 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 2836 174 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
21703043 21703043 PRJEB29441_P_NODE_15798_length_273_cov_2.732143_g15357_i0 PRJEB29441 15798 273 2.732143 7.45875039 Planoprotostelium aurantium 65008 Evosea other_Eukaryota 505 1.6e-138   NTclustered gi|262262919|gb|FJ766462.1| 65008 g15357 i0 100 50.3443223443223 273 0 100 0 1 273 48 320 Planoprotostelium aurantium strain LEE06-2l-3-1 small subunit ribosomal RNA gene, partial sequence blastn 13744 505 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium aurantium
24252330 24252330 PRJEB29441_P_NODE_30200_length_190_cov_2.560284_g29759_i0 PRJEB29441 30200 190 2.560284 4.8645396 Planoprotostelium aurantium 65008 Evosea other_Eukaryota 348 1.86e-91   NTclustered gi|262262919|gb|FJ766462.1| 65008 g29759 i0 100 278.410526315789 188 0 99 0 1 188 1305 1492 Planoprotostelium aurantium strain LEE06-2l-3-1 small subunit ribosomal RNA gene, partial sequence blastn 52898 348 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium aurantium
24252683 24252683 PRJEB29441_P_NODE_9600_length_367_cov_2.352201_g9159_i0 PRJEB29441 9600 367 2.352201 8.63257767 Planoprotostelium aurantium 65008 Evosea other_Eukaryota 676 0   NTclustered gi|262262919|gb|FJ766462.1| 65008 g9159 i0 100 53.5476839237057 366 0 99 0 1 366 639 1004 Planoprotostelium aurantium strain LEE06-2l-3-1 small subunit ribosomal RNA gene, partial sequence blastn 19652 676 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium aurantium
25214314 25214314 PRJEB29441_P_NODE_23060_length_220_cov_1.192982_g22619_i0 PRJEB29441 23060 220 1.192982 2.6245604 Leptomyxida 66524 Tubulinea other_Eukaryota 392 1.01e-104   NTclustered gi|45386045|gb|AY549563.1| 266050 g22619 i0 98.649 99.3090909090909 222 1 100 2 1 220 75 296 Ripidomyxa sp. RP009 18S ribosomal RNA gene, partial sequence blastn 21848 392 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Ripidomyxa Ripidomyxa sp. RP009
29016618 29016618 PRJEB29441_P_NODE_42068_length_165_cov_0.879310_g41627_i0 PRJEB29441 42068 165 0.87931 1.4508615 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 100 4.149999999999999e-23   NR XP_643810.1 352472 g41627 i0 90.6 9.67272727272727 53 5 96.4 0 3 161 515 567 XP_643810.1 HAM group protein [Dictyostelium discoideum AX4] diamond 1596 101 0.99009900990099 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29622241 29622241 PRJEB29441_P_NODE_31390_length_187_cov_1.115942_g30949_i0 PRJEB29441 31390 187 1.115942 2.08681154 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 93.2 9.9e-21   NR PRP81222.1 1890364 g30949 i0 74.2 0.994652406417112 62 16 99.5 0 186 1 105 166 PRP81222.1 hypothetical protein PROFUN_02056 [Planoprotostelium fungivorum] diamond 186 93.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30248162 30248162 PRJEB29441_P_NODE_47412_length_161_cov_0.910714_g46971_i0 PRJEB29441 47412 161 0.910714 1.46624954 Eumycetozoa 142796 Evosea other_Eukaryota 43.5 0.00665   NR XP_003292097.1 5786 g46971 i0 40.4 3.65217391304348 52 29 96.9 1 3 158 727 776 XP_003292097.1 uncharacterized protein DICPUDRAFT_40017 [Dictyostelium purpureum] diamond 588 43.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31898153 31898153 PRJEB29441_P_NODE_45897_length_162_cov_0.902655_g45456_i0 PRJEB29441 45897 162 0.902655 1.4623011 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 59.3 1.72e-8   NR PRP72885.1 1890364 g45456 i0 64.2 1.96296296296296 53 18 98.1 1 160 2 97 148 PRP72885.1 hypothetical protein PROFUN_17082, partial [Planoprotostelium fungivorum] diamond 318 59.3 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;