RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB2925", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJEB2925 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27942881 27942881 PRJEB2925_P_NODE_8265_length_430_cov_1.663291_g7032_i0 PRJEB2925 8265 430 1.663291 7.1521513 Pseudomonadati 3379134 Bacteria Bacteria 74.3 2.78e-12   NR WP_299993748.1 2025608 g7032 i0 44.1 3.01395348837209 143 77 98.4 3 426 4 802 943 WP_299993748.1 DUF4214 domain-containing protein [Sulfuricurvum sp.] diamond 1296 74.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp.
28959870 28959870 PRJEB2925_P_NODE_15768_length_251_cov_1.532407_g14490_i0 PRJEB2925 15768 251 1.532407 3.84634157 Helicobacter pylori 210 Bacteria Bacteria 134 7.06e-39   NR GAA8853486.1 210 g14490 i0 97 0.788844621513944 66 2 78.9 0 200 3 1 66 GAA8853486.1 hypothetical protein DUHN55_44350 [Helicobacter pylori] diamond 198 134 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29496387 29496387 PRJEB2925_P_NODE_14210_length_272_cov_1.607595_g12932_i0 PRJEB2925 14210 272 1.607595 4.3726584 Helicobacter pylori 210 Bacteria Bacteria 111 2.4e-29   NR GAA8848228.1 210 g12932 i0 100 0.5625 51 0 56.3 0 2 154 68 118 GAA8848228.1 hypothetical protein DUHN55_25950 [Helicobacter pylori] diamond 153 111 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31834698 31834698 PRJEB2925_P_NODE_9277_length_390_cov_2.456338_g8009_i0 PRJEB2925 9277 390 2.456338 9.5797182 Helicobacter pylori 210 Bacteria Bacteria 189 7.840000000000001e-58   NR GAA8850612.1 210 g8009 i0 98 0.784615384615385 102 2 78.5 0 308 3 1 102 GAA8850612.1 hypothetical protein DUHN55_34760 [Helicobacter pylori] diamond 306 189 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;