RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB2925", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJEB2925 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26020 26020 PRJEB2925_P_NODE_11821_length_317_cov_2.117021_g10546_i0 PRJEB2925 11821 317 2.117021 6.71095657 Candidatus Solibacter usitatus 332163 Bacteria Bacteria 381 3.3299999999999996e-101   NTclustered gi|470468228|ref|NR_076103.1| 332163 g10546 i0 88.474 97.3091482649842 321 30 100 7 1 317 1751 1434 Candidatus Solibacter usitatus strain Ellin6076 23S ribosomal RNA gene, complete sequence blastn 30847 381 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus
16602874 16602874 PRJEB2925_P_NODE_13214_length_288_cov_3.118577_g11937_i0 PRJEB2925 13214 288 3.118577 8.98150176 Paludibaculum fermentans 1473598 Bacteria Bacteria 392 1.3799999999999999e-104   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g11937 i0 91.379 174.458333333333 290 20 100 2 1 288 4786295 4786581 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 50244 392 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
26709862 26709862 PRJEB2925_P_NODE_15341_length_257_cov_1.144144_g14063_i0 PRJEB2925 15341 257 1.144144 2.94045008 Pseudomonadati 3379134 Bacteria Bacteria 76.6 5.27e-14   NR MBS1768271.1 1978231 g14063 i0 48.8 1.86770428015564 80 40 93.4 1 13 252 1247 1325 MBS1768271.1 hypothetical protein [Acidobacteriota bacterium] diamond 480 77 0.994805194805195 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27184632 27184632 PRJEB2925_P_NODE_14422_length_269_cov_0.982906_g13144_i0 PRJEB2925 14422 269 0.982906 2.64401714 Bacteria 2 Bacteria Bacteria 80.5 9.98e-18   NR MBK6723234.1 1978231 g13144 i0 100 0.892193308550186 40 0 44.6 0 148 267 1 40 MBK6723234.1 hypothetical protein [Acidobacteriota bacterium] diamond 240 80.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31701862 31701862 PRJEB2925_P_NODE_8037_length_439_cov_3.121287_g6816_i0 PRJEB2925 8037 439 3.121287 13.70244993 Pseudomonadati 3379134 Bacteria Bacteria 47.4 0.00742   NR MDT4968946.1 1978231 g6816 i0 36.1 2.96583143507973 72 41 49.2 1 213 428 3357 3423 MDT4968946.1 trimeric autotransporter adhesin [Acidobacteriota bacterium] diamond 1302 47.8 0.99163179916318 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32594244 32594244 PRJEB2925_P_NODE_14560_length_267_cov_1.887931_g13282_i0 PRJEB2925 14560 267 1.887931 5.04077577 Acidobacteriota bacterium 1978231 Bacteria Bacteria 50.1 1.27e-4   NR MEM9293935.1 1978231 g13282 i0 41.5 0.460674157303371 41 24 46.1 0 125 3 53 93 MEM9293935.1 hydroxymethylglutaryl-CoA reductase [Acidobacteriota bacterium] diamond 123 50.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;