RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB2925", tax_kingdom = "Metazoa" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16602958 16602958 PRJEB2925_P_NODE_5854_length_547_cov_3.027344_g4780_i0 PRJEB2925 5854 547 3.027344 16.55957168 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 201 4.07e-62   NR XP_070558318.1 63121 g4780 i0 58 6.6800731261426 174 63 92.1 3 526 23 40 209 XP_070558318.1 large ribosomal subunit protein eL20-like [Ptychodera flava] diamond 3654 202 0.995049504950495 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
20426768 20426768 PRJEB2925_P_NODE_12317_length_306_cov_1.845018_g11041_i0 PRJEB2925 12317 306 1.845018 5.64575508 Metazoa 33208 Hemichordata other_Eukaryota 143 3.32e-41   NR XP_070554292.1 63121 g11041 i0 65.3 6.92156862745098 101 35 99 0 304 2 60 160 XP_070554292.1 large ribosomal subunit protein eL21-like [Ptychodera flava] diamond 2118 143 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
29275231 29275231 PRJEB2925_P_NODE_6389_length_516_cov_1.979210_g5268_i0 PRJEB2925 6389 516 1.97921 10.2127236 Ptychodera flava 63121 Hemichordata other_Eukaryota 138 1.5e-38   NR XP_070555532.1 63121 g5268 i0 67.3 1.18023255813953 101 33 58.7 0 406 104 1 101 XP_070555532.1 small ribosomal subunit protein eS12-like [Ptychodera flava] diamond 609 138 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;