RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB2925", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7678315 7678315 PRJEB2925_P_NODE_12507_length_302_cov_1.632959_g11230_i0 PRJEB2925 12507 302 1.632959 4.93153618 Asterias rubens 7604 Echinodermata other_Eukaryota 127 5.05e-35   NR XP_033634976.1 7604 g11230 i0 66.3 0.973509933774834 98 32 97.4 1 7 300 4 100 XP_033634976.1 40S ribosomal protein S15-like [Asterias rubens] diamond 294 127 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
24251987 24251987 PRJEB2925_P_NODE_9980_length_367_cov_2.539157_g8708_i0 PRJEB2925 9980 367 2.539157 9.31870619 Patiria miniata 46514 Echinodermata other_Eukaryota 241 6.930000000000001e-59   NTclustered gi|1944912480|ref|XM_038213118.1| 46514 g8708 i0 78.824 144.234332425068 340 65 91 3 11 344 359 21 PREDICTED: Patiria miniata histone H2A-like (LOC119738279), mRNA blastn 52934 241 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
27974347 27974347 PRJEB2925_P_NODE_13385_length_285_cov_2.624000_g12108_i0 PRJEB2925 13385 285 2.624 7.4784 Metazoa 33208 Echinodermata other_Eukaryota 45.1 8.2e-4   NR XP_030837588.1 7668 g12108 i0 95.2 19.0105263157895 21 1 22.1 0 3 65 44 64 XP_030837588.1 stress-associated endoplasmic reticulum protein 2-like [Strongylocentrotus purpuratus] diamond 5418 45.4 0.993392070484582 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;