RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB2925", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15328325 15328325 PRJEB2925_P_NODE_8233_length_431_cov_3.058081_g7000_i0 PRJEB2925 8233 431 3.058081 13.18032911 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 215 3.27e-65   NR XP_002788268.1 423536 g7000 i0 72.7 9.95359628770302 143 39 99.5 0 3 431 311 453 XP_002788268.1 translation elongation factor EF-1, subunit alpha, putative [Perkinsus marinus ATCC 50983] diamond 4290 215 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
28864858 28864858 PRJEB2925_P_NODE_5428_length_575_cov_2.464815_g4390_i0 PRJEB2925 5428 575 2.464815 14.17268625 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 114 2.4e-27   NR TEB19254.1 2494336 g4390 i0 47.1 0.72 138 70 72 1 5 418 129 263 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 414 114 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016
31265566 31265566 PRJEB2925_P_NODE_7135_length_477_cov_1.938914_g5969_i0 PRJEB2925 7135 477 1.938914 9.24861978 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 46.6 0.0125   NR TEB19254.1 2494336 g5969 i0 26.9 1.0062893081761 160 100 89.9 5 430 2 1 160 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 480 46.6 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;