RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB2925", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6404340 6404340 PRJEB2925_P_NODE_4226_length_675_cov_7.070312_g3306_i0 PRJEB2925 4226 675 7.070312 47.724606 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 226 1.5e-71   NR CEP02281.1 37360 g3306 i0 59.8 5.49333333333333 204 79 90.7 2 8 619 1 201 CEP02281.1 hypothetical protein PBRA_008865 [Plasmodiophora brassicae] diamond 3708 226 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27697034 27697034 PRJEB2925_P_NODE_13004_length_292_cov_3.735409_g11727_i0 PRJEB2925 13004 292 3.735409 10.90739428 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 63.5 4.45e-11   NR CEO98595.1 37360 g11727 i0 63.5 0.534246575342466 52 19 53.4 0 17 172 1 52 CEO98595.1 hypothetical protein PBRA_006708 [Plasmodiophora brassicae] diamond 156 63.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;