RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB2925", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJEB2925 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5128533 5128533 PRJEB2925_P_NODE_7405_length_466_cov_2.452436_g6224_i0 PRJEB2925 7405 466 2.452436 11.42835176 Chthoniobacter flavus 191863 Bacteria Bacteria 702 0   NTclustered gi|183579828|emb|AM905425.1| 497964 g6224 i0 92.275 272.285407725322 466 34 100 1 1 466 2398 1935 Chthoniobacter flavus 23S rRNA gene, strain Ellin428 blastn 126885 702 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
6404288 6404288 PRJEB2925_P_NODE_15166_length_259_cov_1.866071_g13888_i0 PRJEB2925 15166 259 1.866071 4.83312389 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 77.8 1.92e-14   NR HRJ70964.1 2832348 g13888 i0 55.1 2.71042471042471 78 29 83.4 1 259 44 369 446 HRJ70964.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Terrimicrobiaceae bacterium] diamond 702 77.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
6404359 6404359 PRJEB2925_P_NODE_6326_length_519_cov_3.462810_g5206_i0 PRJEB2925 6326 519 3.46281 17.9719839 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 704 0   NTclustered gi|226525288|gb|FJ872373.1| 156588 g5206 i0 91.137 311.822736030829 519 46 100 0 1 519 16980 16462 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 161836 704 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
8953089 8953089 PRJEB2925_P_NODE_16068_length_247_cov_1.811321_g14790_i0 PRJEB2925 16068 247 1.811321 4.47396287 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 217 7.479999999999999e-52   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g14790 i0 96.899 12.4655870445344 129 4 87 0 1 129 3555945 3555817 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 3079 217 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
8953145 8953145 PRJEB2925_P_NODE_6148_length_530_cov_3.262626_g5045_i0 PRJEB2925 6148 530 3.262626 17.2919178 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 839 0   NTclustered gi|226525288|gb|FJ872373.1| 156588 g5045 i0 95.283 99.2660377358491 530 23 100 2 1 530 16446 15919 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 52611 839 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
19151620 19151620 PRJEB2925_P_NODE_14696_length_265_cov_1.882609_g13418_i0 PRJEB2925 14696 265 1.882609 4.98891385 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 243 1.34e-59   NTclustered gi|2874254065|emb|OY970130.1| 412056 g13418 i0 98.54 28.8 137 2 100 0 129 265 5153208 5153072 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 7632 243 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
28454646 28454646 PRJEB2925_P_NODE_16526_length_241_cov_1.116505_g15248_i0 PRJEB2925 16526 241 1.116505 2.69077705 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.2 7.14e-13   NR SPE60028.1 2026799 g15248 i0 47.3 0.921161825726141 74 39 92.1 0 223 2 811 884 SPE60028.1 putative YD repeat protein [Verrucomicrobiota bacterium] diamond 222 73.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31708346 31708346 PRJEB2925_P_NODE_8077_length_437_cov_10.965174_g6853_i0 PRJEB2925 8077 437 10.965174 47.91781038 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.5 0.0266   NR PYK19803.1 2026799 g6853 i0 43.8 0.329519450800915 48 25 31.6 1 202 339 35 82 PYK19803.1 MAG: hypothetical protein DME56_09020 [Verrucomicrobiota bacterium] diamond 144 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;