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contig_metadata

12 rows where bioproject = "PRJEB2925", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 12 ✖

bioproject 1

  • PRJEB2925 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26044 26044 PRJEB2925_P_NODE_13661_length_280_cov_7.204082_g12383_i0 PRJEB2925 13661 280 7.204082 20.1714296 Meloidogyne enterolobii 390850 Nematoda Nematoda 101 4.82e-26   NR CAD2132787.1 390850 g12383 i0 82.1 1.22142857142857 56 10 60 0 234 67 1 56 CAD2132787.1 unnamed protein product [Meloidogyne enterolobii] diamond 342 101 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
3852335 3852335 PRJEB2925_P_NODE_9524_length_382_cov_2.775216_g8254_i0 PRJEB2925 9524 382 2.775216 10.60132512 Rhabditoides inermis 96661 Nematoda Nematoda 172 2.68e-38   NTclustered gi|256709257|gb|GQ422281.1| 96661 g8254 i0 80.519 5.30628272251309 231 39 60 6 138 365 57 284 Rhabditoides inermis small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 2027 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
6404362 6404362 PRJEB2925_P_NODE_6646_length_502_cov_2.734475_g5501_i0 PRJEB2925 6646 502 2.734475 13.7270645 Caenorhabditis elegans 6239 Nematoda Nematoda 182 6e-41   NTclustered gi|1972261274|ref|NM_001384026.2| 6239 g5501 i0 80.591 17.0099601593625 237 44 47 2 212 447 138 373 Caenorhabditis elegans ATP synthase c subunit (Y82E9BR.3), mRNA blastn 8539 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10228856 10228856 PRJEB2925_P_NODE_14009_length_275_cov_1.562500_g12731_i0 PRJEB2925 14009 275 1.5625 4.296875 Metazoa 33208 Nematoda Nematoda 163 6.28e-49   NR NP_496384.1 6239 g12731 i0 86.8 70.4509090909091 91 12 99.3 0 273 1 40 130 NP_496384.1 Small ribosomal subunit protein uS4 [Caenorhabditis elegans] diamond 19374 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10228877 10228877 PRJEB2925_P_NODE_15909_length_249_cov_1.953271_g14631_i0 PRJEB2925 15909 249 1.953271 4.86364479 Opisthokonta 33154 Nematoda Nematoda 89 4.82e-20   NR ULU06033.1 6238 g14631 i0 89.6 21.9759036144578 48 5 57.8 0 144 1 61 108 ULU06033.1 hypothetical protein L3Y34_018141 [Caenorhabditis briggsae] diamond 5472 89 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
20426757 20426757 PRJEB2925_P_NODE_11777_length_318_cov_2.844523_g10502_i0 PRJEB2925 11777 318 2.844523 9.04558314 root 1 Root_unresolved Root_unresolved 176 6.539999999999999e-54   NR KAF8364219.1 54126 g10502 i0 80 37.6415094339623 105 21 99.1 0 317 3 9 113 KAF8364219.1 cyn-7, partial [Pristionchus pacificus] diamond 11970 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
20426833 20426833 PRJEB2925_P_NODE_4017_length_700_cov_2.978947_g3124_i0 PRJEB2925 4017 700 2.978947 20.852629 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 310 2.2399999999999994e-104   NR XP_003139952.1 7209 g3124 i0 70.5 34.6585714285714 207 61 88.7 0 19 639 1 207 XP_003139952.1 50S ribosomal protein L16 [Loa loa] diamond 24261 312 0.993589743589744 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
26900271 26900271 PRJEB2925_P_NODE_5761_length_553_cov_1.955598_g4693_i0 PRJEB2925 5761 553 1.955598 10.81445694 Metazoa 33208 Nematoda Nematoda 100 1.43e-21   NR KAH7717885.1 70226 g4693 i0 41.4 2.3869801084991 133 72 68.9 1 107 487 128 260 KAH7717885.1 cathepsin L-like protein [Aphelenchoides avenae] diamond 1320 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
30918098 30918098 PRJEB2925_P_NODE_9234_length_392_cov_2.218487_g7966_i0 PRJEB2925 9234 392 2.218487 8.69646904 Mesorhabditis spiculigera 96644 Nematoda Nematoda 162 5.96e-45   NR CAJ0582755.1 96644 g7966 i0 56.7 2.91581632653061 127 54 97.2 1 2 382 327 452 CAJ0582755.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 1143 162 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
31448896 31448896 PRJEB2925_P_NODE_11036_length_336_cov_3.584718_g9762_i0 PRJEB2925 11036 336 3.584718 12.04465248 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 81.6 2.56e-15   NR KAL1246409.1 6334 g9762 i0 51.3 7.26785714285714 80 39 71.4 0 85 324 30 109 KAL1246409.1 E3 UFM1-protein ligase [Trichinella spiralis] diamond 2442 82 0.995121951219512 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
31866353 31866353 PRJEB2925_P_NODE_7897_length_444_cov_3.520782_g6685_i0 PRJEB2925 7897 444 3.520782 15.63227208 Pristionchus fissidentatus 1538716 Nematoda Nematoda 88.6 2.12e-19   NR GMT18625.1 1538716 g6685 i0 40.5 1.75675675675676 131 71 87.8 3 444 55 2 126 GMT18625.1 hypothetical protein PFISCL1PPCAC_9922 [Pristionchus fissidentatus] diamond 780 88.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
32656743 32656743 PRJEB2925_P_NODE_10500_length_351_cov_6.879747_g9228_i0 PRJEB2925 10500 351 6.879747 24.14791197 Pristionchus fissidentatus 1538716 Nematoda Nematoda 128 7.67e-36   NR GMT14341.1 1538716 g9228 i0 65.6 1.58119658119658 93 31 79.5 1 325 47 7 98 GMT14341.1 hypothetical protein PFISCL1PPCAC_5638, partial [Pristionchus fissidentatus] diamond 555 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;