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contig_metadata

31 rows where bioproject = "PRJEB2925" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 31 ✖

bioproject 1

  • PRJEB2925 · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26036 26036 PRJEB2925_P_NODE_13101_length_290_cov_33.258824_g11824_i0 PRJEB2925 13101 290 33.258824 96.4505896 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 418 2.3e-112   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g11824 i0 94.526 46.8413793103448 274 10 93 3 1 270 1761 1489 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 13584 418 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
26063 26063 PRJEB2925_P_NODE_16421_length_242_cov_2.169082_g15143_i0 PRJEB2925 16421 242 2.169082 5.24917844 Vannella septentrionalis 197531 Discosea other_Eukaryota 76.8 1.29e-9   NTclustered gi|300078499|gb|GU001161.1| 197531 g15143 i0 95.745 12.7933884297521 47 2 19 0 1 47 1201 1247 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3096 76.8 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
1300310 1300310 PRJEB2925_P_NODE_11522_length_324_cov_1.913495_g10247_i0 PRJEB2925 11522 324 1.913495 6.1997238 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 206 2.21e-48   NTclustered gi|423291978|gb|JQ519434.1| 5778 g10247 i0 92.908 40.8611111111111 141 10 79 0 1 141 740 600 Vermamoeba vermiformis clone JG10.93_e2 actin gene, partial cds blastn 13239 206 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1300402 1300402 PRJEB2925_P_NODE_5102_length_600_cov_13.946903_g2987_i1 PRJEB2925 5102 600 13.946903 83.681418 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 817 0   NTclustered gi|330902858|gb|JF298255.1| 1017091 g2987 i1 95.858 46.4833333333333 507 18 84 3 1 505 567 1072 Cochliopodium larifeili clone 904 18S ribosomal RNA gene, partial sequence blastn 27890 817 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
1300449 1300449 PRJEB2925_P_NODE_9482_length_383_cov_3.591954_g8212_i0 PRJEB2925 9482 383 3.591954 13.75718382 Tubulinea group 04 sp. CAL5 1215995 Tubulinea other_Eukaryota 702 0   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g8212 i0 99.739 14.3080939947781 383 1 100 0 1 383 577 195 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 5480 702 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
3852315 3852315 PRJEB2925_P_NODE_7544_length_459_cov_2.002358_g6353_i0 PRJEB2925 7544 459 2.002358 9.19082322 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 113 2.01e-20   NTclustered gi|470423488|ref|XM_004337555.1| 1257118 g6353 i0 82.308 10.723311546841 130 23 28 0 308 437 371 500 Acanthamoeba castellanii str. Neff ribosomal protein L23, putative (ACA1_164710), partial mRNA blastn 4922 113 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6404262 6404262 PRJEB2925_P_NODE_12526_length_301_cov_4.199248_g11249_i0 PRJEB2925 12526 301 4.199248 12.63973648 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 470 6.529999999999999e-128   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g11249 i0 95.533 53.109634551495 291 6 96 3 1 289 1900 1615 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 15986 470 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa
7365678 7365678 PRJEB2925_P_NODE_14066_length_274_cov_2.121339_g12788_i0 PRJEB2925 14066 274 2.121339 5.81246886 root 1 Root_unresolved Root_unresolved 418 2.15e-112   NTclustered gi|292559443|ref|NC_013986.1| 5778 g12788 i0 95.42 52.8357664233577 262 12 96 0 13 274 19574 19835 Hartmannella vermiformis mitochondrion, complete genome blastn 14477 418 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8953155 8953155 PRJEB2925_P_NODE_7148_length_476_cov_7.049887_g5981_i0 PRJEB2925 7148 476 7.049887 33.55746212 Ripella sp. GP2 1217115 Discosea other_Eukaryota 778 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g5981 i0 96.218 98.9474789915966 476 16 100 1 1 476 1686 1213 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 47099 778 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
10228847 10228847 PRJEB2925_P_NODE_13229_length_288_cov_2.173913_g11952_i0 PRJEB2925 13229 288 2.173913 6.26086944 Cavenderia medusoides 361117 Evosea other_Eukaryota 161 4.24e-35   NTclustered gi|169930320|gb|EU360785.1| 361117 g11952 i0 89.683 36.53125 126 13 44 0 2 127 230 105 Cavenderia medusoides isolate OH592 elongation factor 1 alpha gene, partial cds blastn 10521 161 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia medusoides
11504234 11504234 PRJEB2925_P_NODE_8330_length_427_cov_4.836735_g7095_i0 PRJEB2925 8330 427 4.836735 20.65285845 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.011   NTclustered gi|470512462|ref|XM_004352440.1| 1257118 g7095 i0 100 0.133489461358314 29 0 7 0 260 288 714 686 Acanthamoeba castellanii str. Neff 3' exoribonuclease family, domain 1 domain containing protein (ACA1_360300), partial mRNA blastn 57 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12779663 12779663 PRJEB2925_P_NODE_1671_length_1383_cov_16.011869_g1234_i0 PRJEB2925 1671 1383 16.011869 221.44414827 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 1410 0   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g1234 i0 93.613 52.9703543022415 955 43 68 13 1 939 1761 809 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 73258 1410 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
14054257 14054257 PRJEB2925_P_NODE_2552_length_966_cov_5.425349_g1912_i0 PRJEB2925 2552 966 5.425349 52.40887134 Dictyostelium discoideum 44689 Evosea other_Eukaryota 743 0   NTclustered gi|66813933|ref|XM_636054.1| 352472 g1912 i0 81.421 93.8819875776397 915 164 94 5 1 912 220 1131 Dictyostelium discoideum AX4 hypothetical protein (act7) mRNA, complete cds blastn 90690 743 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
16290765 16290765 PRJEB2925_P_NODE_17273_length_213_cov_12.696629_g15995_i0 PRJEB2925 17273 213 12.696629 27.04381977 Vermamoeba 1260114 Tubulinea other_Eukaryota 394 2.7e-105   NTclustered gi|1345606837|gb|MG969829.1| 5778 g15995 i0 100 99.9953051643192 213 0 100 0 1 213 216 428 Vermamoeba vermiformis isolate Hart1f small subunit ribosomal RNA gene, partial sequence blastn 21299 394 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16602918 16602918 PRJEB2925_P_NODE_1974_length_1203_cov_36.297945_g1234_i1 PRJEB2925 1974 1203 36.297945 436.66427835 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 1884 0   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g1234 i1 95.066 63.9534497090607 1216 29 100 20 1 1203 1761 564 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 76936 1884 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
16602956 16602956 PRJEB2925_P_NODE_5574_length_565_cov_5.128302_g4522_i0 PRJEB2925 5574 565 5.128302 28.9749063 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 568 4.469999999999999e-157   NTclustered gi|300078496|gb|GU001158.1| 5778 g4522 i0 95.265 63.9769911504425 359 16 64 1 207 565 1139 1496 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 36147 568 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19151613 19151613 PRJEB2925_P_NODE_14056_length_274_cov_2.527197_g12778_i0 PRJEB2925 14056 274 2.527197 6.92451978 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 193 1.4200000000000001e-44   NTclustered gi|292559443|ref|NC_013986.1| 5778 g12778 i0 95.082 29.5948905109489 122 6 79 0 153 274 19264 19385 Hartmannella vermiformis mitochondrion, complete genome blastn 8109 193 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21390263 21390263 PRJEB2925_P_NODE_2517_length_977_cov_8.829087_g1885_i0 PRJEB2925 2517 977 8.829087 86.26017999 root 1 Root_unresolved Root_unresolved 228 1.53e-54   NTclustered gi|28194602|gb|AF479546.1| 65658 g1885 i0 79.37 15.3807574206755 349 52 35 18 140 479 767 430 Acanthamoeba astronyxis strain ATCC 30137 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 15027 228 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba astronyxis
21702865 21702865 PRJEB2925_P_NODE_4438_length_655_cov_4.350000_g3496_i0 PRJEB2925 4438 655 4.35 28.4925 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 363 2.65e-95   NTclustered gi|511487963|gb|JX898537.1| 1260765 g3496 i0 80.864 31.4595419847328 486 71 73 20 88 565 1 472 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 20606 363 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
22978111 22978111 PRJEB2925_P_NODE_3859_length_721_cov_5.976676_g2987_i0 PRJEB2925 3859 721 5.976676 43.09183396 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 1173 0   NTclustered gi|330902856|gb|JF298254.1| 1017091 g2987 i0 95.994 37.5866851595007 724 25 100 4 1 721 566 1288 Cochliopodium larifeili clone 902 18S ribosomal RNA gene, partial sequence blastn 27100 1173 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
25214191 25214191 PRJEB2925_P_NODE_7080_length_479_cov_43.927928_g5915_i0 PRJEB2925 7080 479 43.927928 210.41477512 Saccamoeba 136463 Tubulinea other_Eukaryota 885 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g5915 i0 100 94.5574112734864 479 0 100 0 1 479 1654 1176 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 45293 885 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
26653096 26653096 PRJEB2925_P_NODE_11081_length_335_cov_2.066667_g9807_i0 PRJEB2925 11081 335 2.066667 6.92333445 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 106 5.6999999999999986e-24   NR XP_004356787.1 1257118 g9807 i0 56.2 0.940298507462687 105 45 93.1 1 321 10 603 707 XP_004356787.1 IQGAPrelated protein [Acanthamoeba castellanii str. Neff] diamond 315 106 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28006146 28006146 PRJEB2925_P_NODE_9185_length_394_cov_2.509749_g7918_i0 PRJEB2925 9185 394 2.509749 9.88841106 Acytosteliales 2058181 Evosea other_Eukaryota 99.8 1.2e-23   NR XP_004360719.1 261658 g7918 i0 49.5 1.59137055837563 105 51 79.9 1 324 10 18 120 XP_004360719.1 essential myosin light chain [Cavenderia fasciculata] diamond 627 99.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
28517676 28517676 PRJEB2925_P_NODE_6587_length_505_cov_3.008511_g5448_i0 PRJEB2925 6587 505 3.008511 15.19298055 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 170 2.22e-50   NR XP_004356664.1 1257118 g5448 i0 54.4 0.95049504950495 160 67 91.5 3 42 503 3 162 XP_004356664.1 rho guanine dissociation factor isoform 2, putative [Acanthamoeba castellanii str. Neff] diamond 480 170 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28953391 28953391 PRJEB2925_P_NODE_14708_length_265_cov_1.673913_g13430_i0 PRJEB2925 14708 265 1.673913 4.43586945 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.8 8.24e-4   NR BAN33737.1 931554 g13430 i0 78.6 1.26792452830189 28 6 31.7 0 1 84 348 375 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 336 47.8 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
29149472 29149472 PRJEB2925_P_NODE_14109_length_273_cov_3.327731_g12831_i0 PRJEB2925 14109 273 3.327731 9.08470563 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 102 1.28e-25   NR 1CNU_A 5757 g12831 i0 54.7 5.47252747252747 86 38 94.5 1 2 259 47 131 1CNU_A Chain A, ACTOPHORIN [Acanthamoeba polyphaga] diamond 1494 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
29432934 29432934 PRJEB2925_P_NODE_3510_length_765_cov_5.249315_g2695_i0 PRJEB2925 3510 765 5.249315 40.15725975 Dictyostelium discoideum 44689 Evosea other_Eukaryota 226 2.54e-70   NR AAD53482.1 44689 g2695 i0 50.2 2.39607843137255 209 102 81.6 2 101 724 16 223 AAD53482.1 countin [Dictyostelium discoideum] diamond 1833 226 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
30184665 30184665 PRJEB2925_P_NODE_8872_length_405_cov_2.227027_g7612_i0 PRJEB2925 8872 405 2.227027 9.01945935 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 124 4.16e-31   NR KAF2070448.1 133409 g7612 i0 59 46.5111111111111 105 43 77.8 0 3 317 240 344 KAF2070448.1 hypothetical protein CYY_008228 [Polysphondylium violaceum] diamond 18837 125 0.992 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
31423664 31423664 PRJEB2925_P_NODE_15616_length_253_cov_1.545872_g14338_i0 PRJEB2925 15616 253 1.545872 3.91105616 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 68.2 4.58e-11   NR XP_004341324.1 1257118 g14338 i0 45.2 0.865612648221344 73 33 85.4 2 224 9 64 130 XP_004341324.1 calponin (CH) domain containing protein [Acanthamoeba castellanii str. Neff] diamond 219 68.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32278058 32278058 PRJEB2925_P_NODE_6499_length_510_cov_5.730526_g5365_i0 PRJEB2925 6499 510 5.730526 29.2256826 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 155 5.24e-45   NR KYR02504.1 361077 g5365 i0 51.7 2.55882352941176 145 70 85.3 0 21 455 1 145 KYR02504.1 actin binding protein [Tieghemostelium lacteum] diamond 1305 155 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32594248 32594248 PRJEB2925_P_NODE_8360_length_426_cov_2.675192_g7123_i0 PRJEB2925 8360 426 2.675192 11.39631792 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 127 4.4599999999999996e-32   NR KYQ91790.1 361077 g7123 i0 52.6 2.8943661971831 137 61 95.1 3 424 20 228 362 KYQ91790.1 severin [Tieghemostelium lacteum] diamond 1233 127 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;