RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB28589", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB28589 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7678245 7678245 PRJEB28589_S_NODE_6867_length_295_cov_1.233871_g6759_i0 PRJEB28589 6867 295 1.233871 3.63991945 Brachyspira hyodysenteriae 159 Bacteria Bacteria 52.8 0.027   NTclustered gi|2620055352|gb|CP117021.1| 159 g6759 i0 96.875 0.21694915254237301 32 0 11 1 189 219 2382491 2382522 Brachyspira hyodysenteriae strain ZH1179 chromosome, complete genome blastn 64 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae
27317889 27317889 PRJEB28589_S_NODE_14143_length_196_cov_1.295302_g14035_i0 PRJEB28589 14143 196 1.295302 2.53879192 Spirochaetota bacterium 2202144 Bacteria Bacteria 42 0.0349   NR MBN2547206.1 2202144 g14035 i0 38 0.76530612244898 50 31 76.5 0 30 179 196 245 MBN2547206.1 methyltransferase domain-containing protein [Spirochaetota bacterium] diamond 150 42 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;