RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB28589", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB28589 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27349564 27349564 PRJEB28589_S_NODE_6383_length_302_cov_5.290196_g6275_i0 PRJEB28589 6383 302 5.290196 15.97639192 Helicobacter pylori 210 Bacteria Bacteria 52.8 5.67e-7   NR GAA9105325.1 210 g6275 i0 64.9 0.367549668874172 37 13 36.8 0 237 127 3 39 GAA9105325.1 hypothetical protein Kyoto184A_09530 [Helicobacter pylori] diamond 111 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32782857 32782857 PRJEB28589_S_NODE_3940_length_346_cov_4.090301_g3832_i0 PRJEB28589 3940 346 4.090301 14.15244146 Sulfurovum sp. 1969726 Bacteria Bacteria 46.6 0.00366   NR NOR55401.1 1969726 g3832 i0 33.1 1.02312138728324 118 65 96.2 3 333 1 27 137 NOR55401.1 hypothetical protein [Sulfurovum sp.] diamond 354 46.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;