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contig_metadata

23 rows where bioproject = "PRJEB28589" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 23 ✖

tax_kingdom 1

bioproject 1

  • PRJEB28589 · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
988030 988030 PRJEB28589_S_NODE_4661_length_332_cov_4.343860_g4553_i0 PRJEB28589 4661 332 4.34386 14.4216152 Cutibacterium 1912216 Bacteria Bacteria 54.7 0.009   NTclustered gi|1446500593|gb|CP031442.1| 1747 g4553 i0 96.875 3.67168674698795 32 1 10 0 301 332 657100 657131 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 1219 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
2263326 2263326 PRJEB28589_S_NODE_3682_length_351_cov_6.220395_g3574_i0 PRJEB28589 3682 351 6.220395 21.83358645 Propionibacteriaceae 31957 Bacteria Bacteria 326 1.77e-84   NTclustered gi|1976468523|gb|CP069240.1| 33010 g3574 i0 89.015 79.977207977208 264 27 75 2 84 346 438576 438838 Cutibacterium avidum strain KCTC 5339 chromosome, complete genome blastn 28072 329 0.990881458966565 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium avidum
3852102 3852102 PRJEB28589_S_NODE_15164_length_186_cov_0.884892_g15056_i0 PRJEB28589 15164 186 0.884892 1.64589912 Knoellia locipacati 882824 Bacteria Bacteria 329 6.56e-86   NTclustered gi|2851051056|gb|CP087730.1| 882824 g15056 i0 98.913 201.736559139785 184 2 99 0 1 184 68565 68748 Knoellia locipacati strain SLM-625 chromosome, complete genome blastn 37523 329 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Knoellia Knoellia locipacati
7365645 7365645 PRJEB28589_S_NODE_5606_length_314_cov_3.730337_g5498_i0 PRJEB28589 5606 314 3.730337 11.71325818 Cutibacterium 1912216 Bacteria Bacteria 580 3.0299999999999992e-161   NTclustered gi|966542502|gb|CP012354.1| 1747 g5498 i0 100 53.3503184713376 314 0 100 0 1 314 1803893 1803580 Cutibacterium acnes strain PA_12_1_L1 chromosome, complete genome blastn 16752 580 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
8641215 8641215 PRJEB28589_S_NODE_787_length_571_cov_6.503817_g690_i0 PRJEB28589 787 571 6.503817 37.13679507 Cutibacterium 1912216 Bacteria Bacteria 743 0   NTclustered gi|966544767|gb|CP012355.1| 1747 g690 i0 92.22 237.900175131349 527 37 92 4 46 571 625951 625428 Cutibacterium acnes strain PA_15_1_R1 chromosome, complete genome blastn 135841 743 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
9916189 9916189 PRJEB28589_S_NODE_1328_length_473_cov_7.164319_g1224_i0 PRJEB28589 1328 473 7.164319 33.88722887 Cutibacterium 1912216 Bacteria Bacteria 773 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g1224 i0 96.391 267.365750528541 471 13 99 4 1 469 56554 56086 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 126464 773 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
10228725 10228725 PRJEB28589_S_NODE_2509_length_387_cov_2.126471_g2401_i0 PRJEB28589 2509 387 2.126471 8.22944277 Salinibacterium soli 3064523 Bacteria Bacteria 186 2.21e-53   NR WP_305003951.1 3064523 g2401 i0 80.2 0.976744186046512 126 25 97.7 0 380 3 446 571 WP_305003951.1 dynamin family protein [Salinibacterium soli] diamond 378 186 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Antiquaquibacter Antiquaquibacter soli
11504041 11504041 PRJEB28589_S_NODE_2050_length_409_cov_7.707182_g1942_i0 PRJEB28589 2050 409 7.707182 31.52237438 Homoserinibacter sp. YIM 151385 2985506 Bacteria Bacteria 372 2.6499999999999995e-98   NTclustered gi|2428672229|gb|CP115175.1| 2985506 g1942 i0 87.135 79.1711491442543 342 26 82 14 76 409 2545086 2544755 Homoserinibacter sp. YIM 151385 chromosome, complete genome blastn 32381 372 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Homoserinibacter Homoserinibacter sp. YIM 151385
12467135 12467135 PRJEB28589_S_NODE_5930_length_309_cov_3.374046_g5822_i0 PRJEB28589 5930 309 3.374046 10.42580214 Streptomyces 1883 Bacteria Bacteria 571 1.7899999999999995e-158   NTclustered gi|1399240079|gb|CP029788.1| 1885 g5822 i0 100 559.37216828479 309 0 100 0 1 309 1248414 1248722 Streptomyces actuosus strain ATCC 25421 chromosome, complete genome blastn 172846 571 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces actuosus
13741502 13741502 PRJEB28589_S_NODE_19151_length_157_cov_2.090909_g19043_i0 PRJEB28589 19151 157 2.090909 3.28272713 Nocardioidaceae 85015 Bacteria Bacteria 285 1.17e-72   NTclustered gi|2806731072|gb|PQ351029.1| 35761 g19043 i0 99.363 101 157 1 100 0 1 157 359 203 Nocardioides sp. strain b99 16S ribosomal RNA gene, partial sequence blastn 15857 285 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
13741504 13741504 PRJEB28589_S_NODE_2191_length_402_cov_9.380282_g2083_i0 PRJEB28589 2191 402 9.380282 37.70873364 Cutibacterium 1912216 Bacteria Bacteria 743 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g2083 i0 100 53.0970149253731 402 0 100 0 1 402 1216859 1217260 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 21345 743 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
16290701 16290701 PRJEB28589_S_NODE_7173_length_290_cov_4.209877_g7065_i0 PRJEB28589 7173 290 4.209877 12.2086433 Microbacterium 33882 Bacteria Bacteria 78.7 4.43e-10   NTclustered gi|2440500310|gb|CP069429.1| 2809708 g7065 i0 84.615 0.76551724137931 78 12 27 0 35 112 1525168 1525091 Microbacterium sp. EF45047 chromosome, complete genome blastn 222 78.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. EF45047
16602815 16602815 PRJEB28589_S_NODE_6814_length_295_cov_6.516129_g6706_i0 PRJEB28589 6814 295 6.516129 19.22258055 Microbacterium hydrocarbonoxydans 273678 Bacteria Bacteria 104 7.45e-18   NTclustered gi|1915674697|emb|LR882982.1| 273678 g6706 i0 98.333 8.57627118644068 60 0 20 1 59 117 3140623 3140564 Microbacterium hydrocarbonoxydans strain Marseille-P2596 genome assembly, chromosome: contig00001 blastn 2530 104 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium hydrocarbonoxydans
20426614 20426614 PRJEB28589_S_NODE_10517_length_241_cov_2.407216_g10409_i0 PRJEB28589 10517 241 2.407216 5.80139056 Micrococcus luteus 1270 Bacteria Bacteria 418 1.8599999999999995e-112   NTclustered gi|1875928653|gb|CP059046.1| 1270 g10409 i0 97.925 27 241 5 100 0 1 241 256173 255933 Micrococcus luteus strain R17 chromosome, complete genome blastn 6507 418 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
20426638 20426638 PRJEB28589_S_NODE_15237_length_185_cov_2.028986_g15129_i0 PRJEB28589 15237 185 2.028986 3.7536241 Micrococcus yunnanensis 566027 Bacteria Bacteria 337 3.89e-88   NTclustered gi|2506638323|gb|CP125290.1| 566027 g15129 i0 99.462 190.416216216216 186 0 100 1 1 185 247470 247655 Micrococcus yunnanensis strain TJPT4 chromosome, complete genome blastn 35227 337 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus yunnanensis
23940383 23940383 PRJEB28589_S_NODE_5499_length_316_cov_3.137546_g5391_i0 PRJEB28589 5499 316 3.137546 9.91464536 Cutibacterium 1912216 Bacteria Bacteria 584 2.359999999999999e-162   NTclustered gi|1446500593|gb|CP031442.1| 1747 g5391 i0 100 267 316 0 100 0 1 316 55818 55503 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 84372 584 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
28075458 28075458 PRJEB28589_S_NODE_8025_length_276_cov_6.270742_g7917_i0 PRJEB28589 8025 276 6.270742 17.30724792 Mycobacteroides abscessus 36809 Bacteria Bacteria 44.3 0.0159   NR WP_074344327.1 36809 g7917 i0 35.8 0.728260869565217 67 36 72.8 2 64 264 11 70 WP_074344327.1 site-specific integrase [Mycobacteroides abscessus] diamond 201 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus
28770116 28770116 PRJEB28589_S_NODE_2987_length_369_cov_12.767081_g2879_i0 PRJEB28589 2987 369 12.767081 47.11052889 Nonomuraea sp. NPDC 1883105 Bacteria Bacteria 60.1 6.9e-8   NR WP_397337993.1 3364361 g2879 i0 77.4 0.252032520325203 31 7 25.2 0 1 93 213 243 WP_397337993.1 hypothetical protein [Nonomuraea sp. NPDC050328] diamond 93 60.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea sp. NPDC050328
29142851 29142851 PRJEB28589_S_NODE_4389_length_337_cov_7.889655_g4281_i0 PRJEB28589 4389 337 7.889655 26.58813735 Bacillati 1783272 Bacteria Bacteria 218 7.87e-69   NR PYC99595.1 57043 g4281 i0 96.3 1.90504451038576 107 4 95.3 0 321 1 25 131 PYC99595.1 hypothetical protein B4U78_015940, partial [Microbacterium esteraromaticum] diamond 642 218 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium esteraromaticum
29212395 29212395 PRJEB28589_S_NODE_2729_length_378_cov_8.105740_g2621_i0 PRJEB28589 2729 378 8.10574 30.6396972 Mycolicibacterium peregrinum 43304 Bacteria Bacteria 70.9 1.72e-12   NR WP_207548826.1 43304 g2621 i0 75.6 1.05555555555556 45 7 32.5 1 3 125 111 155 WP_207548826.1 cyanase [Mycolicibacterium peregrinum] diamond 399 70.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium peregrinum
29685495 29685495 PRJEB28589_S_NODE_18050_length_163_cov_0.879310_g17942_i0 PRJEB28589 18050 163 0.87931 1.4332753 Trebonia sp. 2767075 Bacteria Bacteria 43.1 0.00758   NR HXC81211.1 2767075 g17942 i0 35.1 1.04907975460123 57 33 97.5 1 3 161 11 67 HXC81211.1 helix-turn-helix domain-containing protein [Trebonia sp.] diamond 171 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Treboniaceae Trebonia Trebonia sp.
29843714 29843714 PRJEB28589_S_NODE_3571_length_354_cov_4.671010_g3463_i0 PRJEB28589 3571 354 4.67101 16.5353754 Streptomyces sp. NPDC 1931 Bacteria Bacteria 170 4.54e-51   NR WP_385231606.1 3346948 g3463 i0 66.7 2.93220338983051 114 37 96.6 1 2 343 87 199 WP_385231606.1 DUF1349 domain-containing protein [Streptomyces sp. NPDC059788] diamond 1038 170 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC059788
30343229 30343229 PRJEB28589_S_NODE_2652_length_381_cov_7.143713_g2544_i0 PRJEB28589 2652 381 7.143713 27.21754653 Actinomycetes 1760 Bacteria Bacteria 182 2.03e-56   NR WP_010851256.1 101689 g2544 i0 70 3.79527559055118 120 36 94.5 0 2 361 41 160 WP_010851256.1 glutathione peroxidase [Phycicoccus elongatus] diamond 1446 183 0.994535519125683 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Phycicoccus Phycicoccus elongatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;