RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB28589", tax_kingdom = "Thermotogati" and tax_superkingdom = "Bacteria"

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tax_phylum 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJEB28589 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5128387 5128387 PRJEB28589_S_NODE_6345_length_303_cov_3.457031_g6237_i0 PRJEB28589 6345 303 3.457031 10.47480393 Tepiditoga spiralis 2108365 Bacteria Bacteria 52.8 0.028   NTclustered gi|1898704378|dbj|AP018712.1| 2108365 g6237 i0 100 0.0924092409240924 28 0 9 0 170 197 76805 76778 Tepiditoga spiralis sy52 DNA, complete genome blastn 28 52.8 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Tepiditoga Tepiditoga spiralis
15328162 15328162 PRJEB28589_S_NODE_6373_length_302_cov_8.125490_g6265_i0 PRJEB28589 6373 302 8.12549 24.5389798 Deinococcus sp. QL22 2939437 Bacteria Bacteria 488 1.81e-133   NTclustered gi|2238957582|gb|CP097149.1| 2939437 g6265 i0 96.61 226.503311258278 295 8 97 2 6 299 1362403 1362110 Deinococcus sp. QL22 chromosome, complete genome blastn 68404 488 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. QL22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;