RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB28589", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB28589 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
988040 988040 PRJEB28589_S_NODE_8801_length_265_cov_3.059633_g8693_i0 PRJEB28589 8801 265 3.059633 8.10802745 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.024   NTclustered gi|2785767404|ref|XM_067218879.1| 5824 g8693 i0 100 0.316981132075472 28 0 11 0 147 174 441 414 Plasmodium brasilianum uncharacterized protein (MKS88_005602), partial mRNA blastn 84 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
10228704 10228704 PRJEB28589_S_NODE_14309_length_194_cov_1.734694_g14201_i0 PRJEB28589 14309 194 1.734694 3.36530636 Plasmodium vivax 5855 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|81298085|gb|DQ161764.1| 5855 g14201 i0 96.97 2.21134020618557 33 0 17 1 28 60 355 324 Plasmodium vivax isolate MalDB60VvD25 vir gene, partial sequence blastn 429 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;