RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB28062" and tax_phylum = "Porifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28062 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2262374 2262374 PRJEB28062_P_NODE_125722_length_248_cov_7.834286_g123358_i0 PRJEB28062 125722 248 7.834286 19.42902928 Haplosclerida 6049 Porifera other_Eukaryota 100 7.9e-17   NTclustered gi|1284883228|gb|KY825184.1| 178514 g123358 i0 80.435 59.0927419354839 138 21 66 5 60 194 3474 3340 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 14655 100 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa
16602713 16602713 PRJEB28062_P_NODE_98554_length_319_cov_2.788618_g96192_i0 PRJEB28062 98554 319 2.788618 8.89569142 Spongia zimocca 1336827 Porifera other_Eukaryota 93.5 1.76e-14   NTclustered gi|512765242|gb|KC869480.1| 1336827 g96192 i0 82.407 35.730407523511 108 17 34 2 93 200 1927 1822 Spongia zimocca voucher NCI128 28S ribosomal RNA gene, partial sequence blastn 11398 93.5 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Spongiidae Spongia Spongia zimocca
17876538 17876538 PRJEB28062_P_NODE_49295_length_509_cov_2.738532_g46947_i0 PRJEB28062 49295 509 2.738532 13.93912788 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 1.68e-22   NR XP_065896656.1 196820 g46947 i0 59.5 3.22986247544204 79 31 46.6 1 414 178 218 295 XP_065896656.1 actin-related protein 2/3 complex subunit 2-A-like [Dysidea avara] diamond 1644 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;