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contig_metadata

19 rows where bioproject = "PRJEB28062" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28062 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23899 23899 PRJEB28062_P_NODE_12421_length_1090_cov_11.895772_g10684_i0 PRJEB28062 12421 1090 11.895772 129.6639148 Pratylenchus vulnus 45931 Nematoda Nematoda 62.1 1.84e-4   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10684 i0 100 0.955963302752294 33 0 3 0 340 372 49 17 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 1042 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
24203 24203 PRJEB28062_P_NODE_17441_length_906_cov_23.708283_g10684_i1 PRJEB28062 17441 906 23.708283 214.79704398 Pratylenchus vulnus 45931 Nematoda Nematoda 62.1 1.52e-4   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10684 i1 100 1.15011037527594 33 0 4 0 535 567 17 49 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 1042 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25168 25168 PRJEB28062_P_NODE_62861_length_439_cov_22.576503_g60500_i0 PRJEB28062 62861 439 22.576503 99.11084817 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.042   NTclustered gi|1557394408|emb|LR031564.1| 45931 g60500 i0 100 0.0637813211845103 28 0 6 0 412 439 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
1299289 1299289 PRJEB28062_P_NODE_54842_length_477_cov_5.027228_g52489_i0 PRJEB28062 54842 477 5.027228 23.97987756 Metazoa 33208 Nematoda Nematoda 153 2.98e-43   NR XP_024504124.1 34506 g52489 i0 67.9 6.85534591194969 109 33 67.3 1 384 64 135 243 XP_024504124.1 Dihydropteridine reductase [Strongyloides ratti] diamond 3270 154 0.993506493506494 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
6401955 6401955 PRJEB28062_P_NODE_121266_length_257_cov_5.521739_g118902_i0 PRJEB28062 121266 257 5.521739 14.19086923 Ancylostoma caninum 29170 Nematoda Nematoda 248 2.78e-61   NTclustered gi|2020645243|gb|MN215971.1| 29170 g118902 i0 88.626 75.443579766537 211 14 80 9 11 216 3145 2940 Ancylostoma caninum mitochondrion, complete genome blastn 19389 248 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
6403500 6403500 PRJEB28062_P_NODE_70186_length_411_cov_1.121302_g67825_i0 PRJEB28062 70186 411 1.121302 4.60855122 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.011   NTclustered gi|1557394408|emb|LR031564.1| 45931 g67825 i0 100 0.0705596107055961 29 0 7 0 383 411 54 26 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8951100 8951100 PRJEB28062_P_NODE_135148_length_224_cov_5.423841_g132784_i0 PRJEB28062 135148 224 5.423841 12.14940384 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g132784 i0 100 0.125 28 0 13 0 1 28 26 53 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11502318 11502318 PRJEB28062_P_NODE_21370_length_809_cov_124.355978_g10684_i2 PRJEB28062 21370 809 124.355978 1006.03986202 Pratylenchus vulnus 45931 Nematoda Nematoda 62.1 1.35e-4   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10684 i2 100 1.28800988875155 33 0 4 0 438 470 17 49 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 1042 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11502961 11502961 PRJEB28062_P_NODE_50650_length_500_cov_104.592506_g48301_i0 PRJEB28062 50650 500 104.592506 522.96253 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.049   NTclustered gi|1557394408|emb|LR031564.1| 45931 g48301 i0 100 0.056 28 0 6 0 462 489 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11503441 11503441 PRJEB28062_P_NODE_72830_length_401_cov_5.911585_g70468_i0 PRJEB28062 72830 401 5.911585 23.70545585 Dictyocaulus viviparus 29172 Nematoda Nematoda 235 4.300000000000001e-71   NR KJH40125.1 29172 g70468 i0 100 0.800498753117207 107 0 80 0 341 21 128 234 KJH40125.1 homeobox domain protein [Dictyocaulus viviparus] diamond 321 235 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
12777681 12777681 PRJEB28062_P_NODE_137051_length_207_cov_20.208955_g134687_i0 PRJEB28062 137051 207 20.208955 41.83253685 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g134687 i0 100 0.135265700483092 28 0 14 0 180 207 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12779110 12779110 PRJEB28062_P_NODE_82291_length_369_cov_21.364865_g79929_i0 PRJEB28062 82291 369 21.364865000000002 78.83635185 Oxyuris equi 132389 Nematoda Nematoda 200 1.18e-46   NTclustered gi|1360375498|gb|KY990021.1| 132389 g79929 i0 93.985 35.9891598915989 133 7 36 1 227 359 2415 2546 Oxyuris equi isolate SAN-7891 28S ribosomal RNA gene, partial sequence blastn 13280 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Oxyuris Oxyuris equi
17875092 17875092 PRJEB28062_P_NODE_102095_length_308_cov_25.625532_g99732_i0 PRJEB28062 102095 308 25.625532 78.92663856 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.029   NTclustered gi|1557394408|emb|LR031564.1| 45931 g99732 i0 100 0.0909090909090909 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
17875583 17875583 PRJEB28062_P_NODE_128275_length_244_cov_28.368421_g125911_i0 PRJEB28062 128275 244 28.368421 69.21894724 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.022   NTclustered gi|1557394408|emb|LR031564.1| 45931 g125911 i0 100 0.114754098360656 28 0 11 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
21700552 21700552 PRJEB28062_P_NODE_121058_length_258_cov_1.572973_g118694_i0 PRJEB28062 121058 258 1.572973 4.05827034 Oscheius dolichura 473156 Nematoda Nematoda 429 9.29e-116   NTclustered gi|158821907|gb|EU195971.1| 473156 g118694 i0 97.984 78.2248062015504 248 4 96 1 1 248 1981 2227 Oscheius dolichura strain JU460 28S ribosomal RNA gene, partial sequence blastn 20182 429 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
21702230 21702230 PRJEB28062_P_NODE_77598_length_385_cov_4.041667_g75236_i0 PRJEB28062 77598 385 4.041667 15.56041795 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.037   NTclustered gi|1557394408|emb|LR031564.1| 45931 g75236 i0 100 0.0727272727272727 28 0 7 0 358 385 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
22975701 22975701 PRJEB28062_P_NODE_114799_length_273_cov_7.750000_g112436_i0 PRJEB28062 114799 273 7.75 21.1575 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.007   NTclustered gi|1557394408|emb|LR031564.1| 45931 g112436 i0 100 0.106227106227106 29 0 11 0 245 273 54 26 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25213325 25213325 PRJEB28062_P_NODE_19740_length_846_cov_3.670116_g17700_i0 PRJEB28062 19740 846 3.670116 31.04918136 Meloidogyne 189290 Nematoda Nematoda 656 0   NTclustered gi|18147020|dbj|AB047767.1| 6304 g17700 i0 81.159 75.725768321513 828 147 98 7 22 846 426 1247 Meloidogyne arenaria DNA, polymorphic marker for virulence, isolate:MAMG-AV blastn 64064 662 0.990936555891239 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne arenaria
32404434 32404434 PRJEB28062_P_NODE_124079_length_251_cov_2.129213_g121715_i0 PRJEB28062 124079 251 2.129213 5.34432463 Enterobius vermicularis 51028 Nematoda Nematoda 131 6.51e-38   NR YP_010133163.1 51028 g121715 i0 96 0.896414342629482 75 3 89.6 0 26 250 2 76 YP_010133163.1 NADH dehydrogenase subunit 4L [Enterobius vermicularis] diamond 225 131 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;