RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB28062" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28062 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27917524 27917524 PRJEB28062_P_NODE_126225_length_248_cov_0.880000_g123861_i0 PRJEB28062 126225 248 0.88 2.1824 Victivallales bacterium 2212475 Bacteria Bacteria 134 5.94e-36   NR MEI3040171.1 2212475 g123861 i0 78 0.991935483870968 82 18 99.2 0 2 247 163 244 MEI3040171.1 LacI family DNA-binding transcriptional regulator [Victivallales bacterium] diamond 246 134 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
32024721 32024721 PRJEB28062_P_NODE_32018_length_649_cov_212.765625_g29717_i0 PRJEB28062 32018 649 212.765625 1380.84890625 Victivallis vadensis 172901 Bacteria Bacteria 75.9 2.32e-12   NR WP_116884269.1 172901 g29717 i0 47.9 0.328197226502311 71 37 32.8 0 289 77 3 73 WP_116884269.1 site-specific tyrosine recombinase XerD [Victivallis vadensis] diamond 213 75.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis vadensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;