RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB28062" and tax_phylum = "Fornicata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB28062 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12778803 12778803 PRJEB28062_P_NODE_65031_length_430_cov_11.910364_g62670_i0 PRJEB28062 65031 430 11.910364 51.2145652 Giardia muris 5742 Fornicata other_Eukaryota 715 0   NTclustered gi|9378|emb|X65063.1| 5742 g62670 i0 99.744 70.7581395348837 391 0 91 1 24 414 2961 3350 G.muris ribosomal RNA operon DNA encoding 16S, 23S and 5.8S ribosomal RNA blastn 30426 715 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
26684855 26684855 PRJEB28062_P_NODE_11381_length_1142_cov_45.537886_g9697_i0 PRJEB28062 11381 1142 45.537886 520.04265812 Giardia muris 5742 Fornicata other_Eukaryota 362 2.6199999999999998e-110   NR TNJ26563.1 5742 g9697 i0 89.7 0.509632224168126 194 18 50.4 1 607 32 1214 1407 TNJ26563.1 High cysteine membrane protein [Giardia muris] diamond 582 362 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
31803049 31803049 PRJEB28062_P_NODE_133077_length_232_cov_12.333333_g130713_i0 PRJEB28062 133077 232 12.333333 28.61333256 Giardia muris 5742 Fornicata other_Eukaryota 141 3.86e-37   NR TNJ27684.1 5742 g130713 i0 100 0.866379310344828 67 0 86.6 0 25 225 627 693 TNJ27684.1 Glutamate-tRNA ligase [Giardia muris] diamond 201 141 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;