RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB28062" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB28062 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28612324 28612324 PRJEB28062_P_NODE_46067_length_529_cov_31.473684_g43725_i0 PRJEB28062 46067 529 31.473684 166.49578836 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 171 8.19e-46   NR CEO95775.1 37360 g43725 i0 63.9 2.81852551984877 119 43 67.5 0 24 380 530 648 CEO95775.1 hypothetical protein PBRA_004488 [Plasmodiophora brassicae] diamond 1491 171 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29811922 29811922 PRJEB28062_P_NODE_111051_length_283_cov_12.419048_g108688_i0 PRJEB28062 111051 283 12.419048 35.14590584 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 62.8 4.9e-9   NR CEO95919.1 37360 g108688 i0 85.3 0.360424028268551 34 5 36 0 42 143 85 118 CEO95919.1 hypothetical protein PBRA_004609 [Plasmodiophora brassicae] diamond 102 62.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31297132 31297132 PRJEB28062_P_NODE_91155_length_341_cov_8.925373_g88793_i0 PRJEB28062 91155 341 8.925373 30.43552193 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 48.9 8.37e-4   NR SPQ96161.1 37360 g88793 i0 52.6 0.668621700879765 38 18 33.4 0 179 66 4213 4250 SPQ96161.1 unnamed protein product [Plasmodiophora brassicae] diamond 228 48.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;