RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB28062" and tax_phylum = "Candidatus Fermentibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Fermentibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28062 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6402628 6402628 PRJEB28062_P_NODE_29006_length_686_cov_7.606852_g26732_i0 PRJEB28062 29006 686 7.606852 52.18300472 Candidatus Fermentibacter 2152900 Bacteria Bacteria 327 3.11e-109   NR NLI02494.1 1729713 g26732 i0 77.3 1.84548104956268 211 48 92.3 0 653 21 15 225 NLI02494.1 Holliday junction branch migration DNA helicase RuvB [Candidatus Fermentibacter daniensis] diamond 1266 328 0.996951219512195 Bacteria FCB group Pseudomonadati Candidatus Fermentibacterota Candidatus Fermentibacteria Candidatus Fermentibacterales Candidatus Fermentibacteraceae Candidatus Fermentibacter Candidatus Fermentibacter danicus
28612337 28612337 PRJEB28062_P_NODE_69827_length_412_cov_3.315634_g67466_i0 PRJEB28062 69827 412 3.315634 13.66041208 Candidatus Fermentibacter danicus 1729713 Bacteria Bacteria 122 3.61e-32   NR NLI03074.1 1729713 g67466 i0 55.1 0.859223300970874 118 53 85.9 0 412 59 57 174 NLI03074.1 hypothetical protein [Candidatus Fermentibacter daniensis] diamond 354 122 1 Bacteria FCB group Pseudomonadati Candidatus Fermentibacterota Candidatus Fermentibacteria Candidatus Fermentibacterales Candidatus Fermentibacteraceae Candidatus Fermentibacter Candidatus Fermentibacter danicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;