RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB28062", tax_kingdom = "Thermoproteati" and tax_phylum = "Nitrososphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 6 ✖

tax_kingdom 1

  • Thermoproteati · 6 ✖

bioproject 1

  • PRJEB28062 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10227283 10227283 PRJEB28062_P_NODE_31009_length_661_cov_24.610544_g28718_i0 PRJEB28062 31009 661 24.610544 162.67569584 Nitrosopumilus piranensis 1582439 Archaea Archaea 669 0   NTclustered gi|756791811|gb|CP010868.1| 1582439 g28718 i0 86.035 27.1845688350983 623 87 94 0 18 640 252591 253213 Nitrosopumilus piranensis strain D3C chromosome, complete genome blastn 17969 669 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus piranensis
16602615 16602615 PRJEB28062_P_NODE_93634_length_334_cov_1.770115_g91272_i0 PRJEB28062 93634 334 1.770115 5.9121841 Nitrosarchaeum sp. AC2 2259673 Archaea Archaea 348 3.5900000000000003e-91   NTclustered gi|1869229208|gb|CP030847.1| 2259673 g91272 i0 87.838 4.5 296 36 89 0 17 312 198842 199137 Nitrosarchaeum sp. AC2 chromosome, complete genome blastn 1503 348 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp. AC2
28644025 28644025 PRJEB28062_P_NODE_45287_length_534_cov_50.451193_g42948_i0 PRJEB28062 45287 534 50.451193 269.40937062 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 120 4.77e-28   NR HEY3527474.1 2169593 g42948 i0 57.3 0.5 89 38 50 0 237 503 175 263 HEY3527474.1 ubiquitin-activating E1 FCCH domain-containing protein [Nitrososphaeraceae archaeon] diamond 267 120 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
31233700 31233700 PRJEB28062_P_NODE_64555_length_432_cov_9.459610_g62194_i0 PRJEB28062 64555 432 9.45961 40.8655152 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 147 3.68e-42   NR MPZ07524.1 2169593 g62194 i0 90.3 0.5 72 7 50 0 193 408 1 72 MPZ07524.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 216 147 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
31455328 31455328 PRJEB28062_P_NODE_109756_length_287_cov_1.985981_g107393_i0 PRJEB28062 109756 287 1.985981 5.69976547 Nitrososphaera sp. 1971748 Archaea Archaea 53.9 6.42e-6   NR HJS81319.1 1971748 g107393 i0 40.7 0.616724738675958 59 35 61.7 0 109 285 166 224 HJS81319.1 glycosyltransferase family A protein [Nitrososphaera sp.] diamond 177 53.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
32278011 32278011 PRJEB28062_P_NODE_43619_length_546_cov_67.627907_g41280_i0 PRJEB28062 43619 546 67.627907 369.24837222 Nitrososphaera sp. 1971748 Archaea Archaea 110 3.59e-26   NR HEU0144910.1 1971748 g41280 i0 69.4 0.340659340659341 62 19 34.1 0 527 342 200 261 HEU0144910.1 DNA polymerase [Nitrososphaera sp.] diamond 186 110 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;