RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB28062", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB28062 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1298140 1298140 PRJEB28062_P_NODE_125062_length_249_cov_32.875000_g122698_i0 PRJEB28062 125062 249 32.875 81.85875 Acanthaster planci 133434 Echinodermata other_Eukaryota 91.6 4.78e-14   NTclustered gi|1229126891|ref|XM_022246344.1| 133434 g122698 i0 83 3.55421686746988 100 17 40 0 25 124 382 481 PREDICTED: Acanthaster planci 40S ribosomal protein S14a (LOC110985294), transcript variant X2, mRNA blastn 885 91.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
2573966 2573966 PRJEB28062_P_NODE_133563_length_231_cov_2.044304_g131199_i0 PRJEB28062 133563 231 2.044304 4.72234224 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 183 7.02e-42   NTclustered gi|1752342804|ref|XM_001178441.4| 7668 g131199 i0 82.609 23.7142857142857 207 36 90 0 1 207 280 74 PREDICTED: Strongylocentrotus purpuratus histone H4 (LOC754479), mRNA blastn 5478 183 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
28549341 28549341 PRJEB28062_P_NODE_31507_length_655_cov_35.103093_g29214_i0 PRJEB28062 31507 655 35.103093 229.92525915 Patiria miniata 46514 Echinodermata other_Eukaryota 46.6 0.00952   NR XP_038078910.1 46514 g29214 i0 33.6 0.558778625954198 122 70 52.7 5 27 371 8 125 XP_038078910.1 uncharacterized protein LOC119746173 [Patiria miniata] diamond 366 46.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;