RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB28062", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJEB28062 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10226513 10226513 PRJEB28062_P_NODE_116769_length_268_cov_4.676923_g114406_i0 PRJEB28062 116769 268 4.676923 12.53415364 uncultured delta proteobacterium 34034 Bacteria Bacteria 409 1.2599999999999998e-109   NTclustered gi|523452746|gb|KF183166.1| 34034 g114406 i0 96.748 88.3805970149254 246 7 92 1 2 247 444 200 Uncultured delta proteobacterium clone S3-038 16S ribosomal RNA gene, partial sequence blastn 23686 409 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24250954 24250954 PRJEB28062_P_NODE_59020_length_456_cov_32.939948_g56661_i0 PRJEB28062 59020 456 32.939948 150.20616288 uncultured delta proteobacterium 34034 Bacteria Bacteria 625 2.0799999999999995e-174   NTclustered gi|315177290|gb|HQ532530.1| 34034 g56661 i0 98.056 90.5789473684211 360 5 79 2 97 456 1 358 Uncultured delta proteobacterium clone CR011F5 16S ribosomal RNA gene, partial sequence blastn 41304 625 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27254331 27254331 PRJEB28062_P_NODE_46543_length_526_cov_33.395143_g44199_i0 PRJEB28062 46543 526 33.395143 175.65845218 Deltaproteobacteria bacterium CG2_3 2026735 Bacteria Bacteria 203 5.5e-64   NR OIP31437.1 1805125 g44199 i0 66.9 1.64828897338403 145 48 82.7 0 492 58 1 145 OIP31437.1 MAG: phenylacetic acid degradation protein PaaI [Deltaproteobacteria bacterium CG2_30_43_15] diamond 867 203 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG2_30_43_15
31297078 31297078 PRJEB28062_P_NODE_124295_length_251_cov_0.865169_g121931_i0 PRJEB28062 124295 251 0.865169 2.17157419 Deltaproteobacteria bacterium GWA2_65_63 1797812 Bacteria Bacteria 57.8 2.11e-7   NR OGP20082.1 1797812 g121931 i0 37.7 0.824701195219124 69 42 81.3 1 204 1 587 655 OGP20082.1 MAG: hypothetical protein A2X90_03970 [Deltaproteobacteria bacterium GWA2_65_63] diamond 207 57.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWA2_65_63

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;