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contig_metadata

21 rows where bioproject = "PRJEB28062", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 21 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 21 ✖

bioproject 1

  • PRJEB28062 · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8951079 8951079 PRJEB28062_P_NODE_133708_length_230_cov_3.337580_g131344_i0 PRJEB28062 133708 230 3.33758 7.676434 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 313 8.53e-81   NTclustered gi|971146634|emb|LN879502.1| 389348 g131344 i0 93.75 69.395652173913 208 13 90 0 23 230 1249073 1249280 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 15961 313 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
12778880 12778880 PRJEB28062_P_NODE_69571_length_413_cov_2.988235_g67210_i0 PRJEB28062 69571 413 2.988235 12.34141055 Chlamydiales bacterium 2047757 Bacteria Bacteria 176 3.34e-48   NR HSX13640.1 2047757 g67210 i0 68.5 0.900726392251816 124 34 90.1 1 22 393 792 910 HSX13640.1 penicillin-binding transpeptidase domain-containing protein [Chlamydiales bacterium] diamond 372 176 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
14051802 14051802 PRJEB28062_P_NODE_111632_length_282_cov_1.842105_g109269_i0 PRJEB28062 111632 282 1.842105 5.1947361 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 353 6.37e-93   NTclustered gi|2874253811|emb|OY969795.1| 464461 g109269 i0 90.335 171.691489361702 269 26 98 0 3 271 2060685 2060953 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 48417 353 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
17877549 17877549 PRJEB28062_P_NODE_99255_length_317_cov_2.118852_g96893_i0 PRJEB28062 99255 317 2.118852 6.71676084 Chlamydiales bacterium 2047757 Bacteria Bacteria 141 5.24e-39   NR HXF29337.1 2047757 g96893 i0 87.7 0.766561514195584 81 10 76.7 0 6 248 83 163 HXF29337.1 IS3 family transposase [Chlamydiales bacterium] diamond 243 141 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
26747902 26747902 PRJEB28062_P_NODE_86801_length_355_cov_5.464539_g84439_i0 PRJEB28062 86801 355 5.464539 19.39911345 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 144 2.11e-39   NR MFI0434098.1 2052176 g84439 i0 82.8 0.735211267605634 87 15 73.5 0 351 91 222 308 MFI0434098.1 tetratricopeptide repeat protein [Parachlamydiaceae bacterium] diamond 261 144 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27001349 27001349 PRJEB28062_P_NODE_130582_length_241_cov_1.666667_g128218_i0 PRJEB28062 130582 241 1.666667 4.01666747 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 88.2 5.25e-20   NR MBX9923789.1 2047756 g128218 i0 55.8 0.95850622406639 77 34 95.9 0 11 241 45 121 MBX9923789.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 231 88.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
27001350 27001350 PRJEB28062_P_NODE_131822_length_237_cov_7.445122_g129458_i0 PRJEB28062 131822 237 7.445122 17.64493914 Chlamydiota bacterium 2081524 Bacteria Bacteria 53.5 2.92e-7   NR PWU16011.1 2081524 g129458 i0 46 0.632911392405063 50 27 63.3 0 220 71 17 66 PWU16011.1 MAG: hypothetical protein C5B45_01490 [Chlamydiota bacterium] diamond 150 53.5 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
27222653 27222653 PRJEB28062_P_NODE_63463_length_437_cov_3.038462_g61102_i0 PRJEB28062 63463 437 3.038462 13.27807894 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 244 7.31e-77   NR WP_059059511.1 389348 g61102 i0 79.3 1.9908466819222 145 30 99.5 0 1 435 200 344 WP_059059511.1 cbb3-type cytochrome c oxidase subunit II [Candidatus Protochlamydia naegleriophila] diamond 870 244 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
27317862 27317862 PRJEB28062_P_NODE_53923_length_482_cov_4.542787_g51570_i0 PRJEB28062 53923 482 4.542787 21.89623334 Chlamydia ibidis 1405396 Bacteria Bacteria 94.7 1.46e-22   NR EPP35752.1 1405396 g51570 i0 93.6 0.29253112033195 47 3 29.3 0 421 281 1 47 EPP35752.1 hypothetical protein CP10139811_1360, partial [Chlamydia ibidis] diamond 141 94.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia ibidis
27791481 27791481 PRJEB28062_P_NODE_64764_length_431_cov_15.837989_g62403_i0 PRJEB28062 64764 431 15.837989 68.26173259 Chlamydiota bacterium 2081524 Bacteria Bacteria 180 4.55e-53   NR MES2200355.1 2081524 g62403 i0 60.3 0.946635730858469 136 54 94.7 0 3 410 161 296 MES2200355.1 glycosyltransferase family 2 protein [Chlamydiota bacterium] diamond 408 180 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28928008 28928008 PRJEB28062_P_NODE_48728_length_512_cov_65.810934_g46381_i0 PRJEB28062 48728 512 65.810934 336.95198208 Simkania sp. 34094 Bacteria Bacteria 71.2 3.27e-12   NR MBS3903906.1 34094 g46381 i0 33.3 0.685546875 117 73 65.6 1 141 476 4 120 MBS3903906.1 hypothetical protein [Simkania sp.] diamond 351 71.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
29306853 29306853 PRJEB28062_P_NODE_58409_length_459_cov_12.637306_g56050_i0 PRJEB28062 58409 459 12.637306 58.00523454 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 152 1.6099999999999996e-43   NR MBX9924663.1 2047756 g56050 i0 62.7 0.77124183006536 118 44 77.1 0 457 104 81 198 MBX9924663.1 guanylate kinase [Rhabdochlamydiaceae bacterium] diamond 354 152 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
30033344 30033344 PRJEB28062_P_NODE_81511_length_372_cov_3.230769_g79149_i0 PRJEB28062 81511 372 3.230769 12.01846068 Chlamydiia bacterium 2052156 Bacteria Bacteria 72.8 1.12e-13   NR MCB1112684.1 2052156 g79149 i0 54.7 0.42741935483871 53 24 42.7 0 169 11 1 53 MCB1112684.1 DUF4339 domain-containing protein [Chlamydiia bacterium] diamond 159 72.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
30159309 30159309 PRJEB28062_P_NODE_100412_length_313_cov_21.925000_g98049_i0 PRJEB28062 100412 313 21.925 68.62525 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 96.7 7.430000000000001e-21   NR MBX9922548.1 2047756 g98049 i0 87.7 0.546325878594249 57 7 54.6 0 143 313 1 57 MBX9922548.1 ATP-binding protein [Rhabdochlamydiaceae bacterium] diamond 171 96.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
30222696 30222696 PRJEB28062_P_NODE_110452_length_285_cov_2.962264_g108089_i0 PRJEB28062 110452 285 2.962264 8.4424524 Chlamydiales bacterium 2047757 Bacteria Bacteria 167 1.07e-45   NR MBX9744316.1 2047757 g108089 i0 81.9 1.97894736842105 94 17 98.9 0 285 4 439 532 MBX9744316.1 hypothetical protein [Chlamydiales bacterium] diamond 564 167 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30507165 30507165 PRJEB28062_P_NODE_132993_length_233_cov_2.712500_g130629_i0 PRJEB28062 132993 233 2.7125 6.320125 Chlamydiota bacterium 2081524 Bacteria Bacteria 115 9.87e-30   NR MBM3197656.1 2081524 g130629 i0 73 2.85836909871245 74 20 95.3 0 224 3 58 131 MBM3197656.1 glycosyltransferase family 2 protein [Chlamydiota bacterium] diamond 666 115 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30507195 30507195 PRJEB28062_P_NODE_64373_length_433_cov_3.477778_g62012_i0 PRJEB28062 64373 433 3.477778 15.05877874 Parachlamydia sp. 2052048 Bacteria Bacteria 192 1.18e-58   NR PJD95972.1 2052048 g62012 i0 64.9 0.928406466512702 134 47 92.8 0 415 14 110 243 PJD95972.1 MAG: carboxymethylenebutenolidase [Parachlamydia sp.] diamond 402 192 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
30563547 30563547 PRJEB28062_P_NODE_91333_length_341_cov_1.932836_g88971_i0 PRJEB28062 91333 341 1.932836 6.59097076 Candidatus Protochlamydia 282132 Bacteria Bacteria 104 7.98e-26   NR WP_052236502.1 362787 g88971 i0 56.3 3.03519061583578 87 38 76.5 0 267 7 1 87 WP_052236502.1 histidine phosphatase family protein [Candidatus Protochlamydia amoebophila] diamond 1035 105 0.990476190476191 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
30981257 30981257 PRJEB28062_P_NODE_100714_length_313_cov_1.283333_g98351_i0 PRJEB28062 100714 313 1.283333 4.01683229 Chlamydiota bacterium 2081524 Bacteria Bacteria 51.6 5.52e-5   NR MBM3193255.1 2081524 g98351 i0 32.5 0.795527156549521 83 53 76.7 1 312 73 168 250 MBM3193255.1 hypothetical protein [Chlamydiota bacterium] diamond 249 51.6 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32278016 32278016 PRJEB28062_P_NODE_49099_length_510_cov_5.864989_g46752_i0 PRJEB28062 49099 510 5.864989 29.9114439 Chlamydia ibidis 1405396 Bacteria Bacteria 91.3 1.28e-20   NR EPP34989.1 1405396 g46752 i0 92 0.511764705882353 87 7 51.2 0 381 121 1 87 EPP34989.1 hypothetical protein CP10139811_1527, partial [Chlamydia ibidis] diamond 261 91.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia ibidis
32871013 32871013 PRJEB28062_P_NODE_68200_length_418_cov_4.202899_g65839_i0 PRJEB28062 68200 418 4.202899 17.56811782 PVC group 1783257 Bacteria Bacteria 141 5.85e-41   NR CRH76161.1 813 g65839 i0 94.3 1.00478468899522 70 4 50.2 0 413 204 6 75 CRH76161.1 Uncharacterised protein [Chlamydia trachomatis] diamond 420 141 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;