RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB28062", tax_clade = "Opisthokonta" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJEB28062 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2262415 2262415 PRJEB28062_P_NODE_130482_length_241_cov_2.303571_g128118_i0 PRJEB28062 130482 241 2.303571 5.55160611 Lumbricidae 6392 Annelida Annelida 418 1.8599999999999995e-112   NTclustered gi|342220107|gb|HQ691218.1| 6398 g128118 i0 97.942 133.460580912863 243 2 100 2 1 241 2432 2191 Lumbricus terrestris 28S ribosomal RNA gene, partial sequence blastn 32164 418 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Lumbricus Lumbricus terrestris
5126251 5126251 PRJEB28062_P_NODE_121785_length_256_cov_2.945355_g119421_i0 PRJEB28062 121785 256 2.945355 7.5401088 Hirudo verbana 311461 Annelida Annelida 58.4 5e-4   NTclustered gi|2918369714|emb|OZ237790.1| 311461 g119421 i0 97.059 15.03515625 34 1 13 0 86 119 1488895 1488862 Hirudo verbana genome assembly, chromosome: 12 blastn 3849 58.4 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Hirudinida Hirudinidae Hirudo Hirudo verbana
11503746 11503746 PRJEB28062_P_NODE_88010_length_351_cov_5.633094_g85648_i0 PRJEB28062 88010 351 5.633094 19.77215994 Hirudo verbana 311461 Annelida Annelida 54.7 0.009   NTclustered gi|2918369614|emb|OZ237780.1| 311461 g85648 i0 100 0.247863247863248 29 0 8 0 314 342 14619731 14619703 Hirudo verbana genome assembly, chromosome: 2 blastn 87 54.7 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Hirudinida Hirudinidae Hirudo Hirudo verbana
14053537 14053537 PRJEB28062_P_NODE_7172_length_1474_cov_2.568879_g5855_i0 PRJEB28062 7172 1474 2.568879 37.86527646 Ailoscolex lacteospumosus 1046305 Annelida Annelida 54.7 0.042   NTclustered gi|2920003257|emb|OZ238860.1| 1046305 g5855 i0 100 0.019674355495251 29 0 2 0 313 341 27426998 27427026 Ailoscolex lacteospumosus genome assembly, chromosome: 1 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Ailoscolecidae Ailoscolex Ailoscolex lacteospumosus
15327206 15327206 PRJEB28062_P_NODE_54733_length_478_cov_1.898765_g52380_i0 PRJEB28062 54733 478 1.898765 9.0760967 Hirudo verbana 311461 Annelida Annelida 56.5 0.004   NTclustered gi|2918369710|emb|OZ237789.1| 311461 g52380 i0 96.97 0.445606694560669 33 1 7 0 164 196 3337457 3337425 Hirudo verbana genome assembly, chromosome: 11 blastn 213 56.5 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Hirudinida Hirudinidae Hirudo Hirudo verbana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;