RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB28062", tax_clade = "Luna-1 subcluster" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Luna-1 subcluster · 3 ✖

bioproject 1

  • PRJEB28062 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7365573 7365573 PRJEB28062_P_NODE_94246_length_332_cov_2.459459_g91884_i0 PRJEB28062 94246 332 2.459459 8.16540388 Aquiluna 529881 Bacteria Bacteria 324 5.999999999999999e-84   NTclustered gi|1850312474|gb|CP054056.1| 2499157 g91884 i0 93.953 160.993975903614 215 12 64 1 107 320 854870 854656 Aquiluna borgnonia strain 15G-AUS-rot chromosome, complete genome blastn 53450 324 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aquiluna Aquiluna borgnonia
10226778 10226778 PRJEB28062_P_NODE_131969_length_237_cov_2.402439_g129605_i0 PRJEB28062 131969 237 2.402439 5.69378043 Rhodoluna limnophila 232537 Bacteria Bacteria 178 3.3599999999999998e-40   NTclustered gi|1666461688|gb|CP040510.1| 232537 g129605 i0 83.871 4.25316455696202 186 30 78 0 3 188 702014 702199 Rhodoluna limnophila strain 36A-HELLB chromosome, complete genome blastn 1008 178 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila
29205943 29205943 PRJEB28062_P_NODE_36489_length_606_cov_3.703565_g34164_i0 PRJEB28062 36489 606 3.703565 22.4436039 Bacillati 1783272 Bacteria Bacteria 48.1 0.00912   NR WP_138316394.1 232537 g34164 i0 57.9 0.371287128712871 38 12 18.8 1 185 298 77 110 WP_138316394.1 hypothetical protein [Rhodoluna limnophila] diamond 225 48.5 0.991752577319588 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;