RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB28062", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • CRuMs · 3 ✖

bioproject 1

  • PRJEB28062 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6402159 6402159 PRJEB28062_P_NODE_132146_length_236_cov_3.625767_g129782_i0 PRJEB28062 132146 236 3.625767 8.55681012 Diphylleia rotans 190327 Root_unresolved Root_unresolved 379 8.549999999999999e-101   NTclustered gi|1200177731|gb|MF039365.1| 190327 g129782 i0 98.598 35.7330508474576 214 3 91 0 23 236 3043 3256 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8433 379 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
11502629 11502629 PRJEB28062_P_NODE_34930_length_620_cov_21.224863_g32610_i0 PRJEB28062 34930 620 21.224863 131.5941506 Diphylleia rotans 190327 Root_unresolved Root_unresolved 169 5.8499999999999994e-37   NTclustered gi|1200177731|gb|MF039365.1| 190327 g32610 i0 91.2 31.708064516129 125 9 20 2 279 402 4712 4835 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19659 169 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
17877209 17877209 PRJEB28062_P_NODE_82755_length_368_cov_3.101695_g80393_i0 PRJEB28062 82755 368 3.101695 11.4142376 Diphylleia rotans 190327 Root_unresolved Root_unresolved 623 5.909999999999999e-174   NTclustered gi|1200177731|gb|MF039365.1| 190327 g80393 i0 98.05 40.625 359 5 97 1 12 368 2677 3035 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14950 623 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;