RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB28062", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJEB28062 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29559389 29559389 PRJEB28062_P_NODE_64250_length_433_cov_31.561111_g61889_i0 PRJEB28062 64250 433 31.561111 136.65961063 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 185 3.73e-51   NR MEN9407862.1 2762014 g61889 i0 67.4 0.914549653579677 132 43 91.5 0 417 22 824 955 MEN9407862.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 396 185 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32309745 32309745 PRJEB28062_P_NODE_21219_length_813_cov_4.747297_g19109_i0 PRJEB28062 21219 813 4.747297 38.59552461 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 121 2.71e-28   NR RJR08382.1 2762014 g19109 i0 41.4 0.490774907749078 133 78 49.1 0 504 106 1 133 RJR08382.1 MAG: hypothetical protein C4588_05625 [Candidatus Parcubacteria bacterium] diamond 399 121 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32404430 32404430 PRJEB28062_P_NODE_10819_length_1172_cov_161.275705_g9164_i0 PRJEB28062 10819 1172 161.275705 1890.1512626 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 297 8.5e-96   NR RJQ25177.1 2762014 g9164 i0 58.8 2.62627986348123 257 104 65.3 1 13 777 12 268 RJQ25177.1 MAG: undecaprenyl-diphosphate phosphatase [Candidatus Parcubacteria bacterium] diamond 3078 297 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;