RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where bioproject = "PRJEB28062", tax_clade = "Amoebozoa" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

  • Eukaryota · 22 ✖

tax_clade 1

  • Amoebozoa · 22 ✖

bioproject 1

  • PRJEB28062 · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1299796 1299796 PRJEB28062_P_NODE_80042_length_377_cov_2.134868_g77680_i0 PRJEB28062 80042 377 2.134868 8.04845236 Perichaena dictyonema 2951132 Evosea other_Eukaryota 636 7.789999999999999e-178   NTclustered gi|2250222210|gb|ON713340.1| 2951132 g77680 i0 98.876 77.4562334217507 356 4 94 0 16 371 1331 1686 Perichaena dictyonema voucher MA59057 small subunit ribosomal RNA gene, partial sequence blastn 29201 636 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Perichaena Perichaena dictyonema
3850335 3850335 PRJEB28062_P_NODE_15804_length_958_cov_8.236158_g13908_i0 PRJEB28062 15804 958 8.236158 78.90239364 Didymium iridis 5793 Evosea other_Eukaryota 335 8.6e-87   NTclustered gi|2687|emb|X60210.1| 5793 g13908 i0 86.928 15.0407098121086 306 30 60 8 29 331 1711 2009 D.iridis LSU rRNA gene blastn 14409 335 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
3851648 3851648 PRJEB28062_P_NODE_77964_length_384_cov_2.501608_g75602_i0 PRJEB28062 77964 384 2.501608 9.60617472 Dianema sp. (in: plasmodial slime molds) 2046418 Evosea other_Eukaryota 231 4.39e-56   NTclustered gi|2180013526|gb|MT154027.2| 2046418 g75602 i0 86.385 86.8229166666667 213 28 94 1 22 233 1616 1828 Dianema sp. (in: Myxogastria) voucher MA:Fungi:86506 small subunit ribosomal RNA gene, partial sequence blastn 33340 231 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Dianemataceae Dianema Dianema sp. (in: plasmodial slime molds)
6401857 6401857 PRJEB28062_P_NODE_116406_length_269_cov_3.341837_g114043_i0 PRJEB28062 116406 269 3.341837 8.98954153 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 84.2 8.74e-12   NTclustered gi|470374499|ref|XM_004333054.1| 1257118 g114043 i0 79.508 0.453531598513011 122 22 45 3 77 196 234 354 Acanthamoeba castellanii str. Neff ribosomal protein L32, putative (ACA1_334790), partial mRNA blastn 122 84.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7676100 7676100 PRJEB28062_P_NODE_120587_length_259_cov_2.021505_g118223_i0 PRJEB28062 120587 259 2.021505 5.23569795 Phalansterium filosum 857046 Evosea other_Eukaryota 87.9 6.47e-13   NTclustered gi|300078501|gb|GU001163.1| 857046 g118223 i0 94.643 3.95366795366795 56 3 22 0 204 259 3031 3086 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1024 87.9 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
8951271 8951271 PRJEB28062_P_NODE_20308_length_832_cov_48.615283_g18248_i0 PRJEB28062 20308 832 48.615283 404.47915456 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 1182 0   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g18248 i0 93.909 21.6418269230769 788 41 94 7 23 808 7032 6250 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18006 1182 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
11190182 11190182 PRJEB28062_P_NODE_100509_length_313_cov_4.658333_g98146_i0 PRJEB28062 100509 313 4.658333 14.58058229 Vermamoeba 1260114 Tubulinea other_Eukaryota 525 1.4399999999999995e-144   NTclustered gi|909719645|gb|KT185625.1| 5778 g98146 i0 98.976 36.185303514377 293 3 94 0 1 293 5794 5502 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 11326 525 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11503293 11503293 PRJEB28062_P_NODE_65810_length_427_cov_9.697740_g63449_i0 PRJEB28062 65810 427 9.69774 41.4093498 Entamoeba gingivalis 38877 Evosea other_Eukaryota 749 0   NTclustered gi|728491|dbj|D28490.1|ENHSRRNA 38877 g63449 i0 100 56.1405152224824 405 0 95 0 1 405 1637 1233 Entamoeba gingivalis SrRNA gene blastn 23972 749 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
12778220 12778220 PRJEB28062_P_NODE_37411_length_597_cov_30.477099_g35084_i0 PRJEB28062 37411 597 30.477099 181.94828103 Vannella septentrionalis 197531 Discosea other_Eukaryota 966 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g35084 i0 97.857 45.1591289782245 560 10 93 1 40 597 2598 3157 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 26960 966 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
15326088 15326088 PRJEB28062_P_NODE_125113_length_249_cov_7.789773_g122749_i0 PRJEB28062 125113 249 7.789773 19.39653477 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 398 2.51e-106   NTclustered gi|221185864|gb|FJ577811.1| 590481 g122749 i0 98.238 81.8995983935743 227 4 91 0 1 227 569 343 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 20393 398 1 Eukaryota Amoebozoa             uncultured Amoebozoa
16600724 16600724 PRJEB28062_P_NODE_12414_length_1091_cov_1.971513_g10677_i0 PRJEB28062 12414 1091 1.971513 21.50920683 Acytostelium leptosomum 133408 Evosea other_Eukaryota 1711 0   NTclustered gi|1057487862|gb|KX539491.1| 133408 g10677 i0 94.963 100.278643446379 1092 53 100 2 1 1091 2142 1052 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 109404 1711 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
16601787 16601787 PRJEB28062_P_NODE_50554_length_501_cov_8.464953_g48205_i0 PRJEB28062 50554 501 8.464953 42.40941453 Didymium iridis 5793 Evosea other_Eukaryota 896 0   NTclustered gi|2687|emb|X60210.1| 5793 g48205 i0 100 7.64471057884232 485 0 97 0 17 501 5541 5057 D.iridis LSU rRNA gene blastn 3830 896 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
20424517 20424517 PRJEB28062_P_NODE_120517_length_259_cov_2.903226_g118153_i0 PRJEB28062 120517 259 2.903226 7.51935534 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 388 1.58e-103   NTclustered gi|221185864|gb|FJ577811.1| 590481 g118153 i0 94.231 64.6525096525097 260 5 100 5 1 259 824 1074 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 16745 388 1 Eukaryota Amoebozoa             uncultured Amoebozoa
20425494 20425494 PRJEB28062_P_NODE_43397_length_548_cov_8.498947_g41059_i0 PRJEB28062 43397 548 8.498947 46.57422956 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 758 0   NTclustered gi|932090235|gb|KP054475.2| 5757 g41059 i0 93.398 13.4051094890511 515 28 93 6 15 526 747 236 Acanthamoeba polyphaga strain Linc Ap-1 mitochondrion, complete genome blastn 7346 758 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
22977095 22977095 PRJEB28062_P_NODE_56839_length_467_cov_2.870558_g54485_i0 PRJEB28062 56839 467 2.870558 13.40550586 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 599 1.2899999999999995e-166   NTclustered gi|470402197|ref|XM_004335593.1| 1257118 g54485 i0 99.694 1.24197002141328 327 1 70 0 20 346 327 1 Acanthamoeba castellanii str. Neff ribosomal protein L35Ae, putative (ACA1_038130), partial mRNA blastn 580 599 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23939443 23939443 PRJEB28062_P_NODE_132179_length_236_cov_2.920245_g129815_i0 PRJEB28062 132179 236 2.920245 6.8917782 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 7.35e-27   NTclustered gi|161207|gb|M21500.1|SLMACT35 5791 g129815 i0 93.333 41.7161016949153 90 6 38 0 122 211 1163 1074 P.polycephalum actin (Ppa35) mRNA, complete cds blastn 9845 134 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
23939455 23939455 PRJEB28062_P_NODE_133859_length_229_cov_9.160256_g131495_i0 PRJEB28062 133859 229 9.160256 20.97698624 Acanthamoeba 5754 Discosea other_Eukaryota 350 6.47e-92   NTclustered gi|909719694|gb|KT185628.1| 5755 g131495 i0 97.115 90.646288209607 208 5 90 1 23 229 2278 2485 Acanthamoeba castellanii isolate BCP-EM3VF21-1 mitochondrion, complete genome blastn 20758 350 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26678278 26678278 PRJEB28062_P_NODE_119541_length_261_cov_12.537234_g117178_i0 PRJEB28062 119541 261 12.537234 32.72218074 Eumycetozoa 142796 Evosea other_Eukaryota 59.3 6.74e-8   NR XP_003284481.1 5786 g117178 i0 42.6 7.91954022988506 68 38 77 1 236 36 766 833 XP_003284481.1 uncharacterized protein DICPUDRAFT_91322 [Dictyostelium purpureum] diamond 2067 59.7 0.993299832495812 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
28833247 28833247 PRJEB28062_P_NODE_135068_length_224_cov_15.668874_g132704_i0 PRJEB28062 135068 224 15.668874 35.09827776 Polysphondylium violaceum 133409 Evosea other_Eukaryota 68.9 1.69e-11   NR KAF2068976.1 133409 g132704 i0 54.5 1.32589285714286 55 25 73.7 0 27 191 62 116 KAF2068976.1 hypothetical protein CYY_009708 [Polysphondylium violaceum] diamond 297 68.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
30191061 30191061 PRJEB28062_P_NODE_135712_length_219_cov_5.883562_g133348_i0 PRJEB28062 135712 219 5.883562 12.88500078 Heterostelium album PN5 2086695 Evosea other_Eukaryota 55.1 1.23e-6   NR XP_020427517.1 670386 g133348 i0 62.2 0.616438356164384 45 16 61.6 1 198 64 458 501 XP_020427517.1 3-oxoacid CoA-transferase [Heterostelium album PN500] diamond 135 55.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
31044613 31044613 PRJEB28062_P_NODE_45895_length_530_cov_26.474836_g43554_i0 PRJEB28062 45895 530 26.474836 140.3166308 Physarum polycephalum 5791 Evosea other_Eukaryota 116 8.839999999999998e-30   NR BAE94683.1 5791 g43554 i0 45.7 0.730188679245283 129 65 70.8 3 95 469 5 132 BAE94683.1 cytochrome b5 [Physarum polycephalum] diamond 387 116 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
32845911 32845911 PRJEB28062_P_NODE_136000_length_216_cov_22.370629_g133636_i0 PRJEB28062 136000 216 22.370629 48.32055864 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 102 1.1399999999999999e-23   NR PRP89791.1 1890364 g133636 i0 92.5 0.736111111111111 53 4 73.6 0 24 182 416 468 PRP89791.1 hypothetical protein PROFUN_00133 [Planoprotostelium fungivorum] diamond 159 102 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;