RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJEB27957" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 8 ✖

bioproject 1

  • PRJEB27957 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23363 23363 PRJEB27957_P_NODE_102881_length_169_cov_1.300000_g102771_i0 PRJEB27957 102881 169 1.3 2.197 Methanotorris igneus 2189 Archaea Archaea 56.5 0.001   NTclustered gi|333750483|gb|CP002737.1| 880724 g102771 i0 92.308 0.230769230769231 39 3 23 0 76 114 176474 176512 Methanotorris igneus Kol 5, complete genome blastn 39 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanotorris Methanotorris igneus
14051571 14051571 PRJEB27957_P_NODE_84212_length_187_cov_1.507246_g84102_i0 PRJEB27957 84212 187 1.507246 2.81855002 Nanoarchaeum equitans 160232 Archaea Archaea 52.8 0.016   NTclustered gi|40068520|gb|AE017199.1| 228908 g84102 i0 100 0.149732620320856 28 0 15 0 40 67 417114 417141 Nanoarchaeum equitans Kin4-M chromosome, complete genome blastn 28 52.8 1 Archaea   Nanobdellati Nanobdellota Candidatus Nanoarchaeia Nanoarchaeales Nanoarchaeaceae Nanoarchaeum Nanoarchaeum equitans
20113308 20113308 PRJEB27957_P_NODE_101616_length_170_cov_1.396694_g101506_i0 PRJEB27957 101616 170 1.396694 2.3743798 Methanosarcina 2207 Archaea Archaea 56.5 0.001   NTclustered gi|1111741292|dbj|AP017646.1| 2210 g101506 i0 100 0.705882352941177 30 0 18 0 109 138 948648 948677 Methanosarcina thermophila DNA, complete genome, strain: MT-1 blastn 120 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila
27127597 27127597 PRJEB27957_P_NODE_74242_length_198_cov_1.046980_g74132_i0 PRJEB27957 74242 198 1.04698 2.0730204 Nitrososphaerota archaeon 2026795 Archaea Archaea 43.5 0.0114   NR MDR1992516.1 2026795 g74132 i0 44.2 0.787878787878788 52 27 75.8 1 153 4 266 317 MDR1992516.1 glucosyltransferase domain-containing protein [Nitrososphaerota archaeon] diamond 156 43.5 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
28391216 28391216 PRJEB27957_P_NODE_30566_length_280_cov_2.701299_g30456_i0 PRJEB27957 30566 280 2.701299 7.5636372 Candidatus Bathyarchaeota archaeon RBG_16_48_13 1797381 Archaea Archaea 43.1 0.0414   NR OGD46717.1 1797381 g30456 i0 33.9 0.664285714285714 62 30 63.2 2 11 187 290 343 OGD46717.1 MAG: hypothetical protein A3K70_04270 [Candidatus Bathyarchaeota archaeon RBG_16_48_13] diamond 186 43.1 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon RBG_16_48_13
29685450 29685450 PRJEB27957_P_NODE_63450_length_211_cov_1.604938_g63340_i0 PRJEB27957 63450 211 1.604938 3.38641918 Promethearchaeati archaeon 2591838 Archaea Archaea 42 0.0454   NR NHJ49133.1 2591838 g63340 i0 23.5 0.966824644549763 68 52 96.7 0 5 208 154 221 NHJ49133.1 AmmeMemoRadiSam system radical SAM enzyme [Promethearchaeati archaeon] diamond 204 42 1 Archaea   Promethearchaeati           Promethearchaeati archaeon
30412649 30412649 PRJEB27957_P_NODE_28233_length_289_cov_1.787500_g28123_i0 PRJEB27957 28233 289 1.7875 5.165875 archaeon 1906665 Archaea Archaea 43.1 0.0456   NR MEK6942231.1 1906665 g28123 i0 37.9 0.685121107266436 66 38 68.5 2 66 263 443 505 MEK6942231.1 phosphoribosylamine--glycine ligase [archaeon] diamond 198 43.1 1 Archaea               archaeon
31170370 31170370 PRJEB27957_P_NODE_52055_length_228_cov_1.178771_g51945_i0 PRJEB27957 52055 228 1.178771 2.68759788 Candidatus Micrarchaeia archaeon 3018267 Archaea Archaea 44.3 0.00896   NR MFA5382703.1 3018267 g51945 i0 29 0.815789473684211 62 44 81.6 0 9 194 597 658 MFA5382703.1 RHS repeat-associated core domain-containing protein [Candidatus Micrarchaeia archaeon] diamond 186 44.3 1 Archaea   Nanobdellati Candidatus Micrarchaeota Candidatus Micrarchaeia       Candidatus Micrarchaeia archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;