RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB27957" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB27957 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31613396 31613396 PRJEB27957_P_NODE_46856_length_237_cov_2.452128_g46746_i0 PRJEB27957 46856 237 2.452128 5.81154336 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.5 0.0193   NR MEK0445437.1 2026799 g46746 i0 38 0.632911392405063 50 31 63.3 0 168 19 398 447 MEK0445437.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 150 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32372877 32372877 PRJEB27957_P_NODE_29679_length_284_cov_1.106383_g29569_i0 PRJEB27957 29679 284 1.106383 3.14212772 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 40.8 0.0437   NR MEY4940355.1 2026799 g29569 i0 41.7 0.507042253521127 48 28 50.7 0 197 54 19 66 MEY4940355.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 144 40.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;