RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB27957" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB27957 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11501456 11501456 PRJEB27957_P_NODE_97130_length_174_cov_1.664000_g97020_i0 PRJEB27957 97130 174 1.664 2.89536 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.015   NTclustered gi|690564372|emb|LN117760.1| 99802 g97020 i0 100 0.160919540229885 28 0 16 0 92 119 1585 1558 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0110095 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
20424141 20424141 PRJEB27957_P_NODE_94197_length_177_cov_1.359375_g94087_i0 PRJEB27957 94197 177 1.359375 2.40609375 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 52.8 0.015   NTclustered gi|2318763078|ref|XM_051219210.1| 6185 g94087 i0 100 0.15819209039548 28 0 16 0 8 35 56 29 Schistosoma haematobium Coiled-coil domain containing (CCDC88B_2), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
22975350 22975350 PRJEB27957_P_NODE_118579_length_164_cov_0.904348_g118469_i0 PRJEB27957 118579 164 0.904348 1.48313072 Liliatrema skrjabini 2725056 Platyhelminthes Platyhelminthes 259 7.52e-65   NTclustered gi|1829007491|gb|MT303945.1| 2725056 g118469 i0 95.122 94.6463414634146 164 8 100 0 1 164 2124 2287 Liliatrema skrjabini voucher L13_2 large subunit ribosomal RNA gene, partial sequence blastn 15522 259 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Liliatrematidae Liliatrema Liliatrema skrjabini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;