RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB27957" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB27957 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6401520 6401520 PRJEB27957_P_NODE_11926_length_396_cov_3.429395_g11817_i0 PRJEB27957 11926 396 3.429395 13.5804042 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.038   NTclustered gi|687022651|emb|LM525565.1| 174720 g11817 i0 100 0.0707070707070707 28 0 7 0 294 321 446616 446589 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000002 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
27507353 27507353 PRJEB27957_P_NODE_123223_length_162_cov_1.840708_g123113_i0 PRJEB27957 123223 162 1.840708 2.98194696 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 57 6.03e-8   NR CAD6198523.1 2777116 g123113 i0 50 7.46296296296296 50 25 92.6 0 8 157 125 174 CAD6198523.1 unnamed protein product [Caenorhabditis auriculariae] diamond 1209 57 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
30444071 30444071 PRJEB27957_P_NODE_120313_length_163_cov_1.824561_g120203_i0 PRJEB27957 120313 163 1.824561 2.97403443 Aphelenchoides avenae 70226 Nematoda Nematoda 41.6 0.0323   NR KAH7723739.1 70226 g120203 i0 48.5 0.607361963190184 33 15 60.7 1 4 102 61 91 KAH7723739.1 Enteropeptidase [Aphelenchoides avenae] diamond 99 41.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;